GgaINT0021987 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19148115-19149356:+
Coord C1 exon
chr12:19148115-19148237
Coord A exon
chr12:19148238-19149251
Coord C2 exon
chr12:19149252-19149356
Length
1014 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTTGCATTCCTTTATTTTAGTTG
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
Seq A exon
GTAGAGTTTCACCTATGGTTTCTGTGGGCACTAATTATCACAAACTGCAAATACCAGGAGTCCTGCTTTTCACTGAAACTGTTTTAATGGTTCATCTCTCAGAGACAAACTCCCTGCAAGTTATCCTTTTATAATACAATCTTAGCTTTAAAAAAAAAATAAAAAAAGAAAATTCTGCAATAAAAATAAGAAAAAAATTGGATTTTTATAATTGGAAGTGGGCAGATTCATGACTAAGTTTTTGAAGCCTCATAATTCGAGTTCTTGGCAGTTTAAGGGAGTAAAGGTATTATCTATCAGCTTTATCAGAGGTTATTTCTTCTCCTAAAGAAATTCTTCTCGTGGGTCATTTAAACCTTAAGGAGAAGTCTCAGTCTGCTTTTATTGTTCATGCTGCATTCTCTCTCCCATCATTTATGCTGGAGCCAGCCAGTTCCACTGCGCTGCTGTGCGTTTGAAAGGTCAAAGGGAAAAAGTAATCTAGGTCTATTTATATATCAATGCTACGTAGATCCCTCCATTAGAGACTCCTTGTTCCTTTTACATCTGAGAAGAAAATTTGTCATCGTGCTGTAAAATGAAAGTAGAGCATCCAGAAGCATTTTTTTTCTGAAGCAGTGCTCTGTGAATCTGCTTTTCAGTTGCTGCAAGCACTCTCGTCCATCCCTGCCTCAGTGCTGAGCAATTAGCACACCTTTGAATTAGGGTGGGTGTAGAAGGGCAGACTGCGTGTGAATGTTCAGGAACCTTCCCCAGTCAGGTGAAGGGTGGGAGAGAATGGATAAGAGAGGAGTACAACATAGCTATTAAAAATATATATATTTGAATCATTCTGACTTGCACCCAAAATAGAGCTGCAGGGTGTCTGGTTGGAATAGAACAAACCTTCTGTCAACTTTGCCCTTTCTTAGCAGCTGACTGCATACTATTTATTTTTTATGCCAAAAATCAGAAATTTAATATCATAGAGAGACATCTGGTGTTTCCCACTCCCTTTGCATTCCTTTATTTTAG
Seq C2 exon
TTGGCTCGTCACAACAAAGAGCTGCAGAACATGCTGAAGCCAGGAGGTCAGATTGAGGGAGACGAGGCTCTGGAGTTCTATGCCAAGCACACGGCACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGATAAAGAAGGCA
R:
CTCAATCTGTGCCGTGTGCTT
Band lengths:
228-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]