RnoINT0076666 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140519626-140521041:+
Coord C1 exon
chr4:140519626-140519748
Coord A exon
chr4:140519749-140520936
Coord C2 exon
chr4:140520937-140521041
Length
1188 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTCTTTGCTTGTGTTCTAGTTG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTGGAAGTGATCAAGAAGGCCTACATGCAAGGCGAAGTGGAGTTTGAGGATGGGGAGAACGGTGAGGATGGAGCAGCCTCCCCCAGGAACGTGGGCCATAACATCTACATCCTCGCTCACCAG
Seq A exon
GTAGGGCCCCCTCTCTCTCTTGCCTTCTACACGTCACCAGTGTAGTAAGCTGGAGGTGCCCTGAGACTCACTCTTCCTGGAAAGCTTTCTCCTAGCACTGGCTGTGCCCATGTGAACAGAGCTTGCAGGTGTGTTAGGTCACCCGCCTTAAGGGGCTGAATTCCAGGATGCTGCCATTTTCCCAGTATGGTGGGTTGGGAACTTGGAAATCCCCATGCTTTGTACATACATCTACCCTTGAGCAGTCACACTGGATGCTTTGTCTGGAGCTGCTAAAAAGGAGTCTTGGGCATTTTATAAATACTAATAAGTCTCCCTTAACAATCTTAAAGAAATAAACTTGATTATCACATTTGGGGATCTGTGGGAACTTGTCCTTACAATTTCCTTTTGTTTGCCTTTCTGGGTGATACTTTCCTTCCCTGATACCAAAATGCCATATTTCATAATCTCTTCCCAAGTGTCTGGGTTTTTAAAGTTGCTTCTTTGAGTATACTGAGTGTCTTCAGGTTTTGGGTGGGGATGGGAAAACCGTAGCCCAGCTGGAGATTGACATGTCCTTTCCTTCACCTCCTTTAAACTTGGGTACAAGACCTGGGTGTGACACAATGAAGGCAAGTGGCCTGGAGTTACTCGGCCCCTTCCCCTGTCCCACGTCACATCCATACTTGCTCCAAAAGGGTTTCTGAGTAGCCCCAGAATAGAGGCTTAATGGGGGTGCTCAGAAAACTTCATGTCCCTCCTGCCTAGCCTAAAATAATCAGAGAAAAGGGGTATCCTGCATGGGCATGAACTGTCCACTCTTTTATGCCAGACTCCCAAAATAGCCTCTGTGCAAAGCAGAGCTTTGCAGAAGGGAGCAAACCTCTCTTTCGTACTTGGCCTTTGACTTACTGCTGGTCATTTTGCAGATTTTTTTTTTATACTCAGAAAAGCAGGGTGTAGCTCAGTCAATACAGTGGTGACCTAGCATGCAAAAAGCCCTGGTTGCCGTAGTGTGCATCCGTAAAACCAGAATTCTGGAGGGAAAAACAGGAGAATCAAAAGGTTAAGGTCATCCTCAGATACATCACATTCAAGGCCAGCCTGAGATGCATGAGACCCTGTCTCAAGGAAAGAAAGAAACCTAGAGTTTAAAACTAGCTCTTATGATCCTCGGCTCCCAGTTTCTCTTTGCTTGTGTTCTAG
Seq C2 exon
TTGGCTCGGCATAACAAAGAACTTCAAACCATGCTGAAACCTGGAGGCCAGGTGGATGGCGATGAAGCTCTGGAGTTCTATGCGAAGCACACAGCACAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGTGATCAAGAAGGCCT
R:
AATTTGTGCTGTGTGCTTCGC
Band lengths:
225-1413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]