GgaINT0021987 @ galGal4
Intron Retention
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18503806-18505047:+
Coord C1 exon
chr12:18503806-18503928
Coord A exon
chr12:18503929-18504942
Coord C2 exon
chr12:18504943-18505047
Length
1014 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTTGCATTCCTTTATTTTAGTTG
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
Seq A exon
GTAGAGTTTCACCTATGGTTTCTGTGGGCACTAATTATCACAAACTGCAAATACCAGGAGTCCTGCTTTTCACTGAAACTGTTTTAATGGTTCATCTCTCAGAGACAAACTCCCTGCAAGTTATCCTTTTATAATACAATCTTAGCTTTAAAAAAAAAATAAAAAAAGAAAATTCTGCAATAAAAATAAGAAAAAAATTGGATTTTTATAATTGGAAGTGGGCAGATTCATGACTAAGTTTTTGAAGCCTCATAATTCGAGTTCTTGGCAGTTTAAGGGAGTAAAGGTATTATCTATCAGCTTTATCAGAGGTTATTTCTTCTCCTAAAGAAATTCTTCTCGTGGGTCATTTAAACCTTAAGGAGAAGTCTCAGTCTGCTTTTATTGTTCATGCTGCATTCTCTCTCCCATCATTTATGCTGGAGCCAGCCAGTTCCACTGCGCTGCTGTGCGTTTGAAAGGTCAAAGGGAAAAAGTAATCTAGGTCTATTTATATATCAATGCTACGTAGATCCCTCCATTAGAGACTCCTTGTTCCTTTTACATCTGAGAAGAAAATTTGTCATCGTGCTGTAAAATGAAAGTAGAGCATCCAGAAGCATTTTTTTTCTGAAGCAGTGCTCTGTGAATCTGCTTTTCAGTTGCTGCAAGCACTCTCGTCCATCCCTGCCTCAGTGCTGAGCAATTAGCACACCTTTGAATTAGGGTGGGTGTAGAAGGGCAGACTGCGTGTGAATGTTCAGGAACCTTCCCCAGTCAGGTGAAGGGTGGGAGAGAATGGATAAGAGAGGAGTACAACATAGCTATTAAAAATATATATATTTGAATCATTCTGACTTGCACCCAAAATAGAGCTGCAGGGTGTCTGGTTGGAATAGAACAAACCTTCTGTCAACTTTGCCCTTTCTTAGCAGCTGACTGCATACTATTTATTTTTTATGCCAAAAATCAGAAATTTAATATCATAGAGAGACATCTGGTGTTTCCCACTCCCTTTGCATTCCTTTATTTTAG
Seq C2 exon
TTGGCTCGTCACAACAAAGAGCTGCAGAACATGCTGAAGCCAGGAGGTCAGATTGAGGGAGACGAGGCTCTGGAGTTCTATGCCAAGCACACGGCACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGATAAAGAAGGCA
R:
CTCAATCTGTGCCGTGTGCTT
Band lengths:
228-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]