HsaINT0083220 @ hg19
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4824303-4825604:+
Coord C1 exon
chr3:4824303-4824425
Coord A exon
chr3:4824426-4825499
Coord C2 exon
chr3:4825500-4825604
Length
1074 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TCTCTGTCCCTGTATTCTAGTTG
3' ss Score
9.69
Exon sequences
Seq C1 exon
GTGGAAGTGATCAAGAAAGCCTACATGCAAGGTGAAGTGGAATTTGAGGATGGAGAAAACGGTGAGGATGGGGCGGCGTCCCCCAGGAACGTGGGGCACAACATCTACATATTAGCCCATCAG
Seq A exon
GTATGATCTCTCCTGTGCCTCCTCTGGATGCTGCCTCCCTACAGGTCCAAAATTCCGAGCTGGAGGGTGCCCCCAGTCTTGCTTTTCCTTTATGACTTTAACCTAGGACTGTCTGTACTCATGAGCCTGCGGCTCACAGGTGCTCGTGGCAACCTGACCCAGTGTGCAGAGTTCCAGGACGTTTCCATTTTTCCACAGTGATAGGGTCATGTAGTTGGAAATCCCCGTGTTTCTTAAAAGCATTCACCCCCAAGCAGTGATACTTGGATGGTTTATGACTCTGTCTGGAGACAGTTGAAAGGAGTCTTAGGCTTTTATAAATATTGATGAGCCTCTCTTAACAATCCAAAGAAATAAACTTCAGCTTCCTTGCATATTGCACTTGGAAATCTGTGGGAACTTGTCCTTATGACTTCCTTTTGTTTCCCTTTTTGGGGATACGGCAATACTTTATGCCCTGGCACCAAAATGCCATGTTTCATAATTCTCCTTCCAAGCGGCTGGGTTTTTGAAGAGCCTTTCTCTTTTTGGATGCCGACGTGCCTTGAGCTTTCGGTGGGTAGGGGCAGGCTGTAACCCTGCTGGAGCCTTGTGTTTCCTGTCCCGTCCACCTCTTTTAAACTCAGGTACGGGAACCAGATACACAACAATGATGATATTGGGCCCGAGGTTGGTGGGCCCCTGTTACCACCCACTGGTTAAAGAATTTCAAACAGTCTCCTGCCTCTTTTCCCTTCCATGACCACATCTGCCACCGAGAAGGTTTCTGAACATTCCGAATGGAGGCTCCCTAGGCTACACAGAAAGCCCCATCTCCCTCCTGCCTGGCTAATGACATCGGGGGAAAGTGGAACCATGTGTGGGCACGAGCTTTCCATGCTTTTCTACCAAGCTCCCAAAATAGCGCCTGTGCACAGCACGCCGTGATGGGATGGAGCAAGCCTCGTGGCACCTTTGCCCTTTGGCTTGCTGCTGGTTATTATGCATTTTTAAATACCCAACATGAGAAAGGAGTTTCTGTGTTCCTGTTGTGAAGAGACACCAACCTCCTGTATCTCTGTCCCTGTATTCTAG
Seq C2 exon
TTGGCTCGGCATAACAAAGAACTTCAGAGCATGCTGAAACCTGGTGGCCAAGTGGACGGAGATGAAGCCCTGGAGTTTTATGCCAAGCACACGGCGCAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-ITPR1:NM_002222:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGTGATCAAGAAAGCCT
R:
CTATCTGCGCCGTGTGCTTG
Band lengths:
226-1300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)