MmuINT0084461 @ mm10
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108488486-108489919:+
Coord C1 exon
chr6:108488486-108488608
Coord A exon
chr6:108488609-108489814
Coord C2 exon
chr6:108489815-108489919
Length
1206 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TCTCTCTGCTTGTGGTCTAGTTG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTGGAAGTGATCAAGAAGGCCTACATGCAAGGTGAAGTGGAATTTGAGGATGGGGAGAACGGTGAGGATGGAGCTGCCTCACCCAGGAACGTGGGCCACAACATCTACATCCTCGCTCACCAG
Seq A exon
GTACAGCCTTCTCTCTCTTGCCCTTCTACACATCACCAGCATGCTAAGCTAGAGGCACCCTGAGACTGACTCTTCCTGGAAAGCTTTCTTCTAGCACTGGTTGTACCCATGTGACCATGGCTTGCAGCTGTGTTTGCCCACCTGCCTTAAGGGGCTGAATTCCCGGACACTGCCATTTTCCTAGTATGGTAGGCCGGGGACTTGGAAATCCCCATGCTCTGTACATATGTCTTCTCTTAAGGATGGTTGTCTAGAGCGGCTGAAAAGGGGTCTTGGGCATCTTATAAATACTAATGAGTCTCTCCTAACAACCTAAAGAAATAAACTTGAGCCTCCTTGATTATCACATTTGGGGATCTGTGGGAACCTGTCCTTACAGTTTCCTTTTGTTTGCCTTTCTGGGTGATACTTTCTTCCCTGACACCAACATGCCATATTTCATAATCACCTCCCAAGTGTCTGGGTTTTTGCAGTTGCTTCTTTGGGTATACTAGTGTCTTCAGGTGTTGGGTGGGGATGGGAAAGCTGAAGCCCAGTGGAGATTAACCTCTCCTTTCCTTAGCCTCTTTTAAACTTAGGTACAGGACCTGGGCATAATACAAAGAAGGCAAGAGGCCTGGAGTTACTAGGTCTCTGTCTCTGCATGTGTACTGAATGATTTCAGACACTCCCCTGTCCCACATTGCCTCCATACTCAGCATCTAGCATCCGAAAGGGTTTCTCAATAGCCCCAGAATGGAGGCTTAATGGGGTGCACAGAAAACTTCATGTCCCTCCTGCCTAGCTTAAGAAATCAGAGAAAAGGGGTATTCTGCATGGGCATGGACTGTCCATTCTTTTATGCCAGACTCCCAAAATAGCCTCTGCAAAGCAGAGCTTTACAGAGGGAGCAAGCCTCTCTTTAGGTACCTTGGCCTTTGGCTTACTGCTGGTCATTTTGCAATTTTTTTTCTAAACTCCGAAAAGCTGGGTATAGCTCAGCTGATACAGTGCTCACCTACCATCCAAAAAGCCCTGGTTGCAGTGGTGTACATCAATAAAACCAGAATTCTGGAGGAAGAAGCAGGAGAATGGAAAGGTTAAGGTCATCCTCAGCTACATCACAAGGTCAAGGCCAGCCCGAGATACATGAGAAAGAAAGAAACCTGGAGTTTAAAGTAGCTCTTGTAATCCTTGACTCCCAGTTTCTCTCTGCTTGTGGTCTAG
Seq C2 exon
TTGGCTCGGCATAACAAAGAACTTCAAACCATGCTGAAACCTGGAGGCCAGGTGGATGGGGATGAAGCTCTGGAGTTCTACGCGAAGCACACAGCACAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102:ENSMUST00000032192:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.166
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGTGATCAAGAAGGCCT
R:
AATTTGTGCTGTGTGCTTCGC
Band lengths:
225-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types