GgaINT0022861 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9325564-9325867:+
Coord C1 exon
chr12:9325564-9325741
Coord A exon
chr12:9325742-9325812
Coord C2 exon
chr12:9325813-9325867
Length
71 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCG
5' ss Score
7.03
3' ss Seq
TGATGTGCGGCCCTTGGCAGGGG
3' ss Score
5.1
Exon sequences
Seq C1 exon
CTGGTGCCAGGTGCCTTGACTGCAGGTGACGGTGGTTCTCCCTGCATCACAGCAGCTGAGCAGGTGGGGACAGTATCCCGGTTGGAGGTGCAGTCATCCAGGAGCAATGTTGCCCGTGTCACCTGGGTCGGTGTGCCGGGAGCCACAGCGTACCGTGTGGTGTGGAGCCGTCGGGACG
Seq A exon
GTACCGTGGGATGAGGACGGGTGGGGACGGCAATGATGGTGGCACCAGGGCTGATGTGCGGCCCTTGGCAG
Seq C2 exon
GGGGCTCGGAGAGGAGCCAGCATGTTCCTGGCCACAACAGCTCCTTCAACATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(58.7=61.7)
A:
NA
C2:
PF0004116=fn3=FE(28.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGGTGGGGACAGTATC
R:
TGTTGAAGGAGCTGTTGTGGC
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]