GgaINT0022910 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9337902-9338331:+
Coord C1 exon
chr12:9337902-9337952
Coord A exon
chr12:9337953-9338286
Coord C2 exon
chr12:9338287-9338331
Length
334 bp
Sequences
Splice sites
5' ss Seq
CCTCCGTCA
5' ss Score
-26.74
3' ss Seq
ATCTCCATCTCTTGCTCCAGGGC
3' ss Score
9.13
Exon sequences
Seq C1 exon
TCCGAACCTCCATTCTCATTTCCCCCTCCATCATCCTTGTCATCTCCCCCT
Seq A exon
CCGTCACATCTGCATCACCCCTGTGCTTTCCACCTCCGTCTCCATCATGTTTCCCGCCACCCCAATGGTCTCCATCTCCACCATGTTCTCCATCACCCCCATGGACTCCATCTCCATCCCCATGGCATTCTCCACTCTCATGGACTCCACCTCCATCTTCATCATGTTCTCCATCCCCATTATGGTCTCCATCGCTCCCATGGTCTCCATCTCCATCCTCATCACAATCTCCATCAACCAACCCCATTGTCTCCATCTCCATCCCTGTCCCTGTCATCCCCATCTCCATCCTCATCACCACTATTGTCTCCACCATCTCCATCTCTTGCTCCAG
Seq C2 exon
GGCCTCCCAGGAGAGAGGGGTCTGGCTGGCCCTGAGGGGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.7=17.6),PF0139113=Collagen=PU(3.0=11.8)
A:
NA
C2:
PF0139113=Collagen=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]