GgaINT0022945 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9344942-9345106:+
Coord C1 exon
chr12:9344942-9344990
Coord A exon
chr12:9344991-9345070
Coord C2 exon
chr12:9345071-9345106
Length
80 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCACCCCATCTCTCCTGCAGCAT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GAGGAGGAGATCCGCGCCTTCGTCAGGCAGGAGATGAGCCAGCACTGTG
Seq A exon
GTGAGCACCTCACAGCTGCCCTGGGTTTGGGGGCTGCCCCACACAGCCCCTCACTCACCCCCACCCCATCTCTCCTGCAG
Seq C2 exon
CATGCGGAGGGCAGCTCCCACGGCGCTTGGATTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:99
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.1=11.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCCGCGCCTTCGTC
R:
GGGAATCCAAGCGCCGTG
Band lengths:
79-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]