GgaINT0031425 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:867767-868558:+
Coord C1 exon
chr9:867767-867894
Coord A exon
chr9:867895-868400
Coord C2 exon
chr9:868401-868558
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CTGCCCTTGTCTTCATTCAGAAC
3' ss Score
9.37
Exon sequences
Seq C1 exon
AGTTTGCTAATGATGTCTCCAGACCAGAGGAGGACAGCATCGCAGAACTCCTACATAGAGGAACCTGATGAAGAGGATCTCAAAGTGAAGCCTTACACACTGGAGGAGTTCTCCTATGAACACTTCAG
Seq A exon
GTGAAGCTCCCTGTGCAGTGCGAGCACGAGGAAAGTTCTAGGTTTTAAGGATCACTGAAGATCAATTAGAAAGGAATCCTTTTCTGATTGGGTTTCTTTTTGTTCCCTCTAATGAACTGTAACTTTGGATGTGCAGAGATTCTGGCACGTCACCTGCTTCTACCTGTTGTCTGCAGAAATGCAAAGGGACAAGCAGATGAATTCTAGCTGGAACTTATTTCTATTTCCAGCAGGCCCTATGCTTACCTCCCATCCACTCTTCATCATTTACCAGCTAGCACTTAATTTGAGAAAATTTAGCCTTCTAAACTTCTCTCCTTTTTGCAAGCATTCTCCTTTCTGGCTTTTAAAGAAGCTGCATTTTCCCATTTTTGCTTTCTTGTATTATCAGAGAAGATCACTGTCTCAGGAAGGAATATGCTTGGAAAAGACACGAGTCTTTTTTATAATGTTCATAGCAATACTGATCTGATAATTTTGTATTGCCTGCCCTTGTCTTCATTCAG
Seq C2 exon
AACTCCTGAGAAGGAATCCATCAGCAAAGCTGTTCTCCAGAAATCTCGTGGGCACAGTCAGCTGTGGGCACACTCTAAGGATCCCTTAAAACAGCCCTTGCTGAAGGCAGCATGCACAGACCCTGATGTTCGGGACGTGGCTTGTCAGGCCTTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCTAATGATGTCTCCAGACC
R:
CAATGAAGGCCTGACAAGCCA
Band lengths:
286-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]