RnoINT0097441 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24753926-24754366:-
Coord C1 exon
chr18:24754236-24754366
Coord A exon
chr18:24754084-24754235
Coord C2 exon
chr18:24753926-24754083
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
ACACCAGCCTTCTCTGGCAGGGC
3' ss Score
6.01
Exon sequences
Seq C1 exon
AACTTGCTGGCCATGTCGCCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCAGGCTTCGGAGCCACCGCTAGAGGAGCAGCTCACAGAGTTACCGTACACCCTGGAGGAGTTCTCCTACCAGTATTTCAG
Seq A exon
GTGCACTCCCCACTCTGAGGGCTGCCAGAAGGCTGGGCTGGATGGTGCACAGCCAGGGATACAAGGAGGGGAAGGGCAGCAGCCACCCTGCAGGGCCAAGCAGGGGCGGAGAAAGCCTCAGCACAGACCCTCACACCAGCCTTCTCTGGCAG
Seq C2 exon
GGCTCCAGAGAAAGAGACCATCAGCAGGGCGGCGATGCCCATGGCCCGAAGCCGAGGCCATCTATGGGCCTACTCTCCCGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAGCTTCGAGATTCAGCCTGCCAGATCTTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCGCCAGAGAAACGGAA
R:
CTTGGCTTTGTCGTGGACAGA
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]