HsaINT0108977 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128388353-128388938:+
Coord C1 exon
chr2:128388353-128388483
Coord A exon
chr2:128388484-128388780
Coord C2 exon
chr2:128388781-128388938
Length
297 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
ACCAGCCTCTAACCTCACAGGGC
3' ss Score
7.42
Exon sequences
Seq C1 exon
AGCTTGCTTGCCATGTCACCAGAGAAGAGGAAGCTGGCGGCTCAGGAGGGGCAGTTCACAGAGCCACGTCCTGAGGAGCCACCCAAGGAAAAGCTGCACACCCTGGAGGAGTTCTCCTATGAGTTCTTCAG
Seq A exon
GTGCCCCCCAGCCCCGCTCCGCCTCATTGCACCCCCACCTCCCAGCCCCACCTCACCTCATTGCACCCCCTGCTCCCAGCCCCGCTCCACCTCATTGCACCCACTGAGAGCTGCAGAGAGGCCACGCCACCCATGTGGAGCCTGCCTGGCCTTCCCAGGCCAGGGGAGTCAGGAGGGGCTTGCGGCAGGGTGGGGTGCTCTGGCCCTCCCACAGCCACTCAGGGGTGTCAGAGGACAGAGAAGCGTGGGACAGAGAAGGCCACAGGGCAGGCCTCACACCAGCCTCTAACCTCACAG
Seq C2 exon
GGCTCCAGAGAAGGACATGGTGAGCATGGCCGTGCTGCCCCTGGCCCGTGCCCGTGGCCACCTGTGGGCCTATTCCTGCGAGCCGCTGCGACAGCCGCTGCTCAAGCGAGTCCACGCCAACGTCGACCTCTGGGACATCGCCTGCCAGATCTTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTGCCATGTCACCAGAG
R:
ACAAAGATCTGGCAGGCGATG
Band lengths:
284-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)