MmuINT0104616 @ mm10
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31966820-31967260:-
Coord C1 exon
chr18:31967130-31967260
Coord A exon
chr18:31966978-31967129
Coord C2 exon
chr18:31966820-31966977
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
AAACCAGCCTTCTCTGGCAGGGC
3' ss Score
4.91
Exon sequences
Seq C1 exon
AGCTTGCTGGCCATGTCACCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCGGGCTCTGGAGCCACCACTGGAGGATCAGCTCACAGAGTCGCCATACACCCTGGAGGAATTCTCCTACCAGTTCTTCAG
Seq A exon
GTGCGGTCCCTACTCTGAGGGCTGCCGGGAGGCTGGGCTGGCCAGCGCACAGCCCAGGATACGAGGGGAAGGAAGGCAGCAGCCATCCTGCAAGGCCAAGCAGGGGCAGAGAAAGCCTCAGCACAGACCCTCAAACCAGCCTTCTCTGGCAG
Seq C2 exon
GGCTCCGGAGAAAGAGACTATCAGCAGGGCTGCGATGCCCATGGCCCGAAGCCGGGGTCATCTCTGGGCCTACTCCCCAGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAACTGCGGGATGCAGCCTGCCAGATCTTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388:ENSMUST00000134663:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGAGAAACGGAAGCTGG
R:
AGTTTGGCTTTGTCGTGGACA
Band lengths:
244-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types