GgaINT0034984 @ galGal4
Intron Retention
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12666105-12666392:+
Coord C1 exon
chr8:12666105-12666210
Coord A exon
chr8:12666211-12666317
Coord C2 exon
chr8:12666318-12666392
Length
107 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
3' ss Seq
CCTTCTCTGTTTTATTTTAGGGA
3' ss Score
12.12
Exon sequences
Seq C1 exon
GTATGGAGGAATTTCTATAGGAGGAAAGCTTCCCGTCCTTCATGTTTCTGGAGATGAAGTTGTCAATTTTTTAAGTAATCTGGGCCGAATGATGAATGTCACAGGA
Seq A exon
GTAAGATTTGTTTGGTCTCTTTACCCAAGGATCATTGCAAAGTTGAAAACCTTTAGCACTGGAATTCCTGAGACAACTGGTCTTTAACCTTCTCTGTTTTATTTTAG
Seq C2 exon
GGACAAACTTCACTGGCTGCTGCTAAAGAATTTTCTAATTTCCTTAAATACATGGAAACTGAAGATAATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(7.0=63.9)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAATTTCTATAGGAGGAAAGC
R:
GGAAATTAGAAAATTCTTTAGCAGCA
Band lengths:
146-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]