GgaINT0034988 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14419190-14421636:+
Coord C1 exon
chr8:14419190-14419305
Coord A exon
chr8:14419306-14421488
Coord C2 exon
chr8:14421489-14421636
Length
2183 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTCTATCTTTTGCATGCAGGTG
3' ss Score
9.99
Exon sequences
Seq C1 exon
GTGAACTATGCAGTGAGTGCTGGATTGGTTGTGGTTATATTCATTGGATTCAAGAAGAAAGCATACACTTCTCGGACTAACCTCCCTGTGTTTGTTGCCTTGCTGCTTCTGTATGG
Seq A exon
GTGAGTCTTCACGGTGTCTTTTTTGCATGTGGAGCCCTATCTTTCACATGGAAATGATTTCATGTTGTTGAACTTTGTACTTAGTGAAATCCAGCTTTGAGAAATAAAACTGAGTTTGTACAATACAGACTAGACCTGGATTCTGTTCCCAAATCAGATTACTTACGCTCTTTGTCTGATCATGCGCCATAAAAGGAGTTTCACCACTGCTTCACAGAACTTTTCATGATTTCATGTTATCCTTTTGGGAAACTAAATTTGCTCATCTCTGGTGGTTTAACCTAGCTACAATAGGTAGCTAAACACCACAACACTTTTTCACACCCTTTCCTCAAAAGGACAGGAGGAGAAAATATACTGAATAAAGCTTGGTGGGCTGAGAAAACAACAGGGATATCACTCACCAAGTAGTGTCGCAGGCAAAAGAGAACAGTGAAAACTTAAAGCAAATGAAAGACATCTTCCCCTCATCTACCCTCTCCTACCTCCTCCCCCTAAGTGGCACAGGGGAATGGGGAATAGGGTTGCAGTCGGCCCCTAACGCTTTGTCCCTGGTCACTTTCTGTCCCTGCTTCATGTGGTGTCCCTCCATGGGATGCTGTCCTTCCCAAACTGATCCCGTGTGGGCTTCCCGCAGGCTGCAGCTCTCCAAGCACTACTCCTACATGGCTGTGCACCATGGGGCCCAGCCTTCAGGAGCGCACTGCTCCAGCACATGTCCCCACAACCAGCAGCTCCCCCAACCCTCCTGCCCCCACCCTTGGCTGCTCCCAACAGGCTGTAGCTCCAGCCTCAGGCTGCTCTTGCAGGGGATCTCCCTGCGCTGTACCTACTTCAGGGCACATCCACTGCTGCACCGGGAGCTCCTCCATGTCTTCACAACCCACAGCCCCCCCTCCCATCCAGCTATTAAAAGTTTGCCTTGTAAACCTAATAATCATCTTGTGCCTTTTTGTTATGTACGCTATGTTTATTTCTTTCAATGACAGACAACACTAAAATATTTACCAGTATTTTATCCAAAAGCAAGCAGTACTAGAACTTCAACTTTTTTTCTTTGAAGGAGCATTTCTGTTGTCAAAATAGTGTTTTATAAGACTGACTGGAATTTACTTCCTCTCACTTAATTAGTGATGGTAGCTCATTTTCCTTCTAGCTTTGTAGTAGGGTAATTAGGGAAAAGAATTCACCAGATCTCTCTCTGGAGATAAAAAAGAAATTAAACTTTTCATATCTTCCTGTATATGTCACAAATCAAACCTTAGAGGCCACAGGTCTTTTCTGGACAAAGTACCTTAATTTTCTGAAGTTTTTATATTCTTTGAATAACAGTTCTGAGAAAATGCAAAGCATTATTCAATCTTTGTAAAACAGTCAATGTTAAATGCTGTTAGAATATTCATTCACTTCATTGTATTTTTTGAAGTGCAATGATAGTATCTTCAGTAAGTTTTCTGTTGCTATGTTGTTTGTGAGTATGTGTTTGTTTTCTAAATACTGTAATTTGGGGGCCTGTGAACACCTGAATTAGCCTCTCATATTATAAAGCATCTATCAAGATGAAAAAATATTATCACATAGCAGTGACTTCAGTAATAATTTCACAATTTGCTATTCAAAATAAAATTTTAAAACAGGTAAGTAAATTCGGAGAGTCCTACATTAGCCTCTGTCTCCAGCCATTGTCACAATGGGAAATTTAGGATCATTCTTTCTAATGACGTGTATGTTTTCCCATTAACCAAATCAGTCAGATTGATTGTTGCTGAGAATTGTAATTTTATTCCAGTGGTATACTGTTTCTGTGCTGCTAAATACATGTTTGCTATGTCTCAGGAATAATGGTATAGGAAGCTCCTGCATTGTCATTTTTTCCCTTGTTTCTCCCACTAAGTGTACAGCCCAGTGAGATATGCAAAGATATTTGGGGTGGTAATAACCTTAATGGTGCTGTTTCTCAATTTTAACAATCTGTTGCCTTGCACTTTAACAACAAACAAGACTAAGCAGAAAAAGCTTTCTGTCTAGTAGCAAGAGAAAACATATTGTAGTGGAACCTCTGGTTGATTACAACATTTCATTACACTTGAAAGGAGAACAGAGCTCATCATTTTGTTTTTATTAGATCAGTTGACATAATACTGAGAAGCAGGTATCATAGTATTTCTATCTTTTGCATGCAG
Seq C2 exon
GTGGGCAGCAATTCCCATGATGTACCCTGCTTCTTCTTTCTTCAGTGTTCCTAGCACTGCATACGTTGCATTGTCTTGCATTAATCTCTTCGTGGGGATCAACAGCAGTGCCATTACATTCATCCTGGAGCTATTTGAAAATAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]