GgaINT0034993 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14425622-14425908:+
Coord C1 exon
chr8:14425622-14425684
Coord A exon
chr8:14425685-14425801
Coord C2 exon
chr8:14425802-14425908
Length
117 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTATTTTTTTTATACTTCAGTGT
3' ss Score
7.91
Exon sequences
Seq C1 exon
ATTTATGCAGGTAGGCATAAGCCAGCAGTGGACAGACTCTGTGTTGGCATCCGTCCTGGAGAG
Seq A exon
GTAAGTTGGTCAATATCACTAGATGAATCATTCCAGGGATCAGTTCAAATTGCATGCTCCTGTTGATTTATAAGTTGGAAATACTAAAGAACGTGATTTATTTTTTTTATACTTCAG
Seq C2 exon
TGTTTTGGTCTTTTGGGAGTGAATGGTGCTGGCAAAACAACAACATTCAAAATGCTGACTGGAGACACTGAAGTGACATCTGGAGATGCAGTTGTGGCCGGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
NA
C2:
PF0000522=ABC_tran=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGGACAGACTCTGTGT
R:
CTATTGCCGGCCACAACTGC
Band lengths:
147-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]