GgaINT0036573 @ galGal4
Intron Retention
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17911068-17912322:+
Coord C1 exon
chr8:17911068-17911176
Coord A exon
chr8:17911177-17912219
Coord C2 exon
chr8:17912220-17912322
Length
1043 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
3' ss Seq
AAGCTCCTTTTTCCTTCCAGCTT
3' ss Score
7.53
Exon sequences
Seq C1 exon
GTATGGAGGAGGACCAGCGGTTAACCATCTGTATGTTTGTCATACCTGCCAAATAGAGTCTGAAAGACTTGAAAAAAGAAGGAAAAATGAATTGGAGATGTTTATTCGG
Seq A exon
GTAAAAAAATAAACAATTCTTATTCTTCTTTTCAGCATCACCTGATATTCATCACTTGACACAAGGAGTTACCAAAATTTCATAGGCAATTTCTGTAACAAATGGACTTCACTAAACGTGTATACCTGTACAGAATCCTTTCCCTTCTGTTAATAACAATGTTCTTATGCTATCTCACACAATTGTTTATACAGAAATATGCTTTAATAAGGAAAGCAATTTAAGAAACATGAAATATTTTTTCAGTAGCATGGAAACTGAGTGCAGCCACATAAGCAACTTTTCTTCATACGCTGCCAGTAATCTGTCCTGTGCAAGAAAATGATCTCTAGTTTCTATAAATAAATAAGATTTTAGGAAATTTGAGGCTTTAAGAAATAATTTTTTGTTAAAGAAACATTTTTTTTCCACTGATGCAGTTAAGTCTGAGGCTCTGTAGCTGTTTCCTGTGATTTTGCGAGAAACTTGAACAACTCAAACTGATATTTTTATTTATTTACTTTAATTGGAACAAAAACCTTAACGTGTTTTGACTAAAGGAAATAAAAAGTTGTGAAAAGTCCTAGTGCGTGAGCTCGTAGGGCCTGTTCAGAATATTGAAAAACAAACACAAAAATATAGTTTATCTCATAAAAAAAAAAAACTTTACATAAAACTGATAAGCAAATCTTTAAAAACACTTTTATTTTACAAAATTAATTTTTCAGCTTTCTTCTGCCATGTGAAAGTTCGACCTTTACAGTAATACAGTAATTATGTGGTAGCATTTAACTGGTAAGCGCTTGTGCTTAAGATCCAGTCTGCTCTTGTTGTTCTCAGGAGAAAGAAAGTTCTTGAGTAGAGAACAAATCATTTTTTTTCAGATGAAGGCTACCGCTGCATCAATCTCACCTCAGGAATTCACCAAGGACTTACTGTCCTGATGGCTTGTAGTTCTTCAAAATGTTCTCTAGCAGTATAATACTATTTTGTTAATAGTTAGAGTGGTTGAAAGAGTTTAAAGAAAAAGAAGCTAGAAAAACAAAGCTCCTTTTTCCTTCCAG
Seq C2 exon
CTTTATAGGGCATTCCAAGAAGAAGAATCTCCATCAACTTTTTACTGCATCAGTATGCAGTGGTTCAGAGAATGGGAAGAATTTGTAAAAGGCAAAGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.6=35.1)
A:
NA
C2:
PF063377=DUSP=PU(31.6=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGAGGAGGACCAGCGGTT
R:
TCTTTGCCTTTTACAAATTCTTCCCA
Band lengths:
206-1249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]