RnoINT0161656 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257595242-257599468:+
Coord C1 exon
chr2:257595242-257595350
Coord A exon
chr2:257595351-257599365
Coord C2 exon
chr2:257599366-257599468
Length
4015 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
3' ss Seq
CTGACTTTTTCTCTCTGTAGCTC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTATGGAGGAGGGCCTGCTGTCAACCACCTCTACATTTGTCACACTTGCCAAATTGAGGCAGAGAAGATTGAAAAACGAAGAAAAACTGAATTGGAAATTTTTATTCGG
Seq A exon
GTAAAAGAAGTAGCACTTTCAAATTGTACATGATGTAAGCTAAAGATGTTGACCTGATAGTTAGCGGAGAGATGGCCGGGTGAGAGAGCTGTAGTAGATGGCAGGGGCCTGCTTGCATAGCCATGATCAACCCTGCTCAGTTCACCACAGTTCTAGCTCTCCCGTGCGTGCGTGCTTTTCTGTTTTCTGTGGATTTGTTTTCTATGGCAAGAGGTCTTAACTCCCCAATTGTATGTTTTCTCCCTAGAGTTGTCTGTTCAGGCTGTAACTGGTGTGGCTGTTAAAGGAACTAGACTTTCATTCTTAAAGGGTCTGAGCCCTCAGCAGCCTTAACTGTTAGATCTCTGTAAGGTTAAGTTTTAATCTCTGGCTGAATGTTATAGAAATAGTGAGTAGTGTCTATAGTCAATTGACTGTTGGATCCTAAAAGGATGTCTCAGGTTGTGTCTTCTGTGAATTGACCTTAATGACAAATGTGACCTTGAGTAGAAACTTTACATAGGATTTTGAGGTGAGATCATGTAGGGTTGTTAATACAAAACCCAAATCCAGTCTGTGTCCCTTTCAAGAGACATTGAGAAGATTCAGAAGGAAGAGAAGCTGTGGGAAGAAAAACGGAGGTGGCCCAGTCACAGGTCGCCCTTTGAAGGATTCAGACATGGGATCTCTCTAGATCTCCAGGGTGTAGTTCCCTCAGTACTTTGATTTTGGATTTGTGTCTCCAAAACAGTGAGATTTCCTTTTCAGTTACCAAGTTTGTGGTCACTTATCATGGTACATGCCATGAAGAATGCAAGATGTACTCTTTCTCTTTCCTATTTTTTTAAGGCAGTTTTTGTTTGTTTGTTTGTTTGTTTTTTTCAGAAAGAGGGTTTCTCTGTGTAACCTTGGGTGTCCTGGAACTCACTGTGTAGACCAGGCTTGCCTGCTTTTGTGCTACAGAGCATGGGTGGCGGACGGAGGACAACTTGAGGGAGAGACTTCTTTGATTCCATCATGTGGGTCCTGAGGAGACCAAGACCCACTGAGCCATCTTGTCAAACTCAGGATTTATTTGTAACTGGGGATTTAAACATTGATTAAAAAGCTAGAAAGAGTTTCCTAGACCACAGGCCTTATCTGAGGTTGTGACGTTGTTCTTACCTTCATGCTTCAAACTCAAAGATACACCTGCCTCTGCCTCCTGAGTGCTGGGGTTAAACGTTTGCACCACCACCATCTAGCATTAAGGACTTTATTTTTAAGTAATGTCTGCACAGCTGTGGTTCAGGGTTGTTTCTTGGGTGGTGTGAGGTAGGATGTGGGTCTTGGGATTTGACCTTAGGGCCCTACACATGCTAAGTCCAGGTCTTGTCATTGAACGTTATCATTAGTCCCTTTGTTATTTTGAGATAGGATTTCAGCATTTTACATCCACATCCTAAGTGGCTGGTCAGAAGTAGGTGACCTCAGTGGCCTGGAAACTAAGACGAGTTTCTGAAACGTCAGGAAAGCAGGTAGGATCAGTTTGAAGAAATGTTGGAGGAAATGGAGTGATCACAGGACCTGGGGTTCAAATGATGGACACCAACGGTGGGTGACTTGGGGGCTGGCTGTCCCCTCCTCCTGTTTGGATCATAGGGATCCCGTCTGCCGCCATGCTTGCTGGAACTTCTGATTCATTGGCAGTCTTGCTGGCCTGCTTTAACTTCTGTTTATTGCGTCAGGGTCTCTGCACCCCAGGCTGGCCTTGGACTTCTGATCTTCTTGCATGTCTTACACCACAGTCAAAGCAGCTCTTACAATAGACAGCAGTTAACACTGGGGCTGGCTTACAGGTTGAAAAGGTCAGTCCATTACTGTCATGGCAGGAATGAATAGGTAGACACCGTGCTGGACAAGGAGCCACGAGTTGTACATCTTGGTCTGAAGGCAGTCAGGAGAAGACTATCTTCCAGGCATCTAGGAAGAGGGTCTCCAAGCCAGCCCCAGAAGTGACACACATACTCCTCCAACAAGGCCACACCTCCTAATGGTGCCACTGCCTAGGTCAAGCATATTCACCCACCACACTGCATTCACTACCCAAAGAGCTGAAATGGTACATCAGTATGCCCAGTTCTTGACTTTTTTAGTACCTTCATACATAGACCCAGAATTCTTCATACCATTTTATTCCTATGTAAGTAGCTTCTGAGTGTCAAAGTGCTTACCTTTAGTAAATATCAAAGGGTCATGAGCAGCTGGGCATGATGGCACATGTCTGTAACCTTAGCCTTTGGGAAGTAAAAGCAGGAGTGTCTGTAATTTGAGGTCATTGGGCTACATGATACACTGTCTTAACCCCTCCCTTTAAAAACGCCATAGAGAAGGAAAATGTTGAACAAGGGCTAAAGAGCTCAAGAGTAGTGTGGGGAATTGAAATGGTCACCATAGGTCTGTTGTGGTGTTAAGAAAGGCTTGTCATAACCAGGCTCTCAGAAAATGCAGGGACAAAAAAACTGAGCAGAGACTGAAGGAAAGGTCATTCAGAAACTGCCCCCACCTTGGGATCCATCCCATTCGCAGATAGCAAACACTATTGCTGATGCTAAGATGTGCTTGCAGACAGGAGACTGGCATGGCTGTCCTGAAAGGCTCTGGCAGCATCTGACTAAGACAGATGCAGAGACTCACAGCCAACCATTGGACTGAGCCTGGGAAGCCCCAGTGGAAGAGTTGGAGGAAGGACTGAAGGAGCTGAAGGGGGGGGGGGGATTGAAATATAAATAAATAAAACAATTAATTAAAAAAGACTTGTAGGATGTGTTGGAGGACAGTCACATAAATAGAGAGAGAGAGAAAGAGACAGAGGAGAGGAGAGGAGAGGAGAGAGAGAATGAATCAAGAATGTATTAGGGTGGTTTTCAGGGAATAACTAAAAGTCACTGTGGTCACAATTATGGATAAAAGGAAATCAGATTCTTGGGTACTTTTGAACCAACAGTGAGAACCTTTGGGGCTAGTATATAGCTCAGACAGTGGAGTGCATAGTTATGCACGAAGCCCTGGGTTCAGTCTCTAAGTACTACATGACACTTGGCCTGGTGATACATGTAAGTATTCCTAGCACTTGGGAGGCAGGAAGATCAGAACTTTAAGGTCATCCTTGGCTACCATTTGAGGCCAGTCTGAGATACATCAAACTGTCTTTTTGAAAAAAAAAAAAAAAGTCTTTGTTACTGGGGATAGAGCTCAATGGTAAAGTACTTACGTAGAAAACAGAAAGCAGTCAGGGGAGAGTAAAGCAAATCTGTGGATGATCACTTTTTTTTTTAATAATCTATGAATACAATTTTAGATTTTACATACCCTTTCCCACCATCTCTCCAATTCCATCTGGATTTCCCCCAAGGCTATAGGGTTTTGATTAGATTTAGTTAAAGAAATGGGGCTGTTTAGATGGTTTTGTGAGTAAAGGCATTCAGGGCCAAGAAGGCTCATCTAAGTTCAATCCCATGATTTCATAGTGAAAGGACAGAACTGACTTTACAAGTTGTCTCTCCCCCTATACACACACAATTTAAAAGTTTTAAAGAAATGTCTATCTGAAGTTAGGTACCTCTGCCCTTATCTTGTGTGTGTATCTATCATGGGCATTTTGTTGCCCAACAGGAAATACTACTGTAATTAGACAATACCCTTTGTTCTTTTGAGGCCTAGTTATGGCATCTCTTTTGCATAAGTATTTCTGTTTAATCTTTACTTTTTTTTAAAGTAGGCTGTGGTACATTTTTAATAAACATACTTTGAGGCTTATTAAAAATTTCCTCTTAACCTGTTCCTTTATGATCCTCTTCTTCTGTATGTGCATCTTATATTTTGAGACAATCTAGGATCATTTATTGATAGACAACACTGTGTATCTCAGAAATAAGATAAGCTAGTGTGTCAGTCTTAGTGCTGCCTCACATATGTATGAGAAAGTTCTTGTTGGATACTGAAGAAGAGGGCTGTGAGTTCCAGATATTAGGTGCCTGACTTTTTCTCTCTGTAG
Seq C2 exon
CTCAACAGAGCATTTCAAGAGGAAGACTCTCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.8=35.1)
A:
NA
C2:
PF063377=DUSP=PU(30.7=65.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]