MmuINT1034542 @ mm10
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152384116-152389831:+
Coord C1 exon
chr3:152384116-152384224
Coord A exon
chr3:152384225-152389740
Coord C2 exon
chr3:152389741-152389831
Length
5516 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
3' ss Seq
CTGACTTTTCCTCTCTGTAGCTC
3' ss Score
10.08
Exon sequences
Seq C1 exon
GTATGGAGGAGGGCCTGCTGTCAACCATCTCTACATCTGCCACACCTGCCAAATTGAGTTAGAGAAGATTGAAAAACGAAGAAAAACCGAATTGGAAATTTTTATTCGG
Seq A exon
GTAAAAGAAGTAGCACTTTGGCGCTGTGGATGACGTCAGCTGAGGATGCTGGCCTGGTGTTAGCAGAGGGGTGGGGGATGGATGGCAGGGGCCTGCCTGCATAGCCACGCCCAACCCTGCTCCGGCCACCGCACCTCAGCCTCTCTTCTTCCCGTTTGCTATGCATTTGCCGTGGCAAGAAGTCTTACTCCCCAGATTGTACGTTTTCTCCCTAGAGTTGTCTGTAGCCTCCAGCTGGTGTGGCTGTTGGGGTTGGTTGTTACAGGAGCCTGAACCTTCATTCTTGAAGGGTCTGAGCCCTCAGCACTCTTCACTGTTAGCTCTTTTCTTTGTAAGGTTAAATTTTAATCTCTGGCTAAAGGTTTTGGAAATAGTGAGTAGTGTCTGTAGCTGACTGATTGTTGGATCCTAAAAGGAGTTTCCCATGTTGTGCCTTTTGTGAATTGACCTTAATGACAAATGTGACCTTGAGTAGAAACTTTACCTAGGATTTTGAGGTGAAGTCATACTGAGTTGTTTATGCAGAACCCAAATCCAGTCAGTGTCCCTTTCAAGAGACAGTGAGAGGATACACAAAGGAGGAAGAAAATGCTGTGGGAAGAAAGATGGAGGTGGAGATGGAAGACCCAGCTATAGGTCGCTCCTTGAAGGAGTCAGACATGGGATCTCTCTGGGTCTCCAGGGACTAGTTCCCTCACTACTCTGATTTTGGATTCTTGTCTCCAAAACTGTGAGAAAAGAGATTTCCCTTTTTAGTTACCAAGTTTGTAGTCACTTATCATTCATTGAGAATGCTACAATGAATGCAATAGGGTAGAATCTCCCCCCCCCCCTTTTTTTTTTTTTTTTGGTTTGGTGGTTTTTCAATTTCAGAAAGAAGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGTTAGCCTCAAACTCAGAGATATACCTGTGGCTGCCTCCTGAGTGCTGGGATTAAACGTGTACACCCCTGCCTAGTATTAAGGACTTTAAGATGTTTGCACAGCTGTGGTTCCGGGATGTTTCTGGGGGGAGGGGGGGCTAAGAGGGATGGGATGTTGGGCTTTGACCAGGGCCCTACACATGTTAAGTCCATGTCCAGTCATTAAACTTTATCATTAGTCCCTTTGTTATTTTGAGACAGGATTTCACTGTGTTCAGGTTGGTGAGATTTGTGTATACTTTTGCCTAATTGGACTCATGAGGGGTGGGGTTACAGTCAGGAGCTAATAAACACCCAGCTTCGATTTATTTTGAATCATGGTATATATAGCAAGTTCCAGGTCAGCCAAGATTGGCCAATGATAGCACACACCTTTAATCCTGCACTTGGGAGGCAGAGGTGGGTGGATCTCTTTATTCTGATAGATTAGTCCTTTAGAGGACATAGACTGTGGTAAAATTCCTATAAAGGAACAATTTTTACACACATGCATGTGTGTTTTGTGTATGTGTTTGATGCTGAAAATCAGACTTAGAACCTTATACATGATAGACAAGTGCTGTACTGTTGGCCTGAATAATACCAAACTGTTTAGGCTCTGTACAGCCCCTATCAAGAATTTGAAAGCTGTTTCTGAGGAATTTGGGCTTCATTTCTGTAATCTGAACACTTGAAGTTAACCTCAGTTATCTAGGAAGACTCAAAACAACACATTTAGCCTGGTGTAGAACACTCTTGTGGTAGAAGTAGGATGGTCAGGGAGTTGACATAATCTTTAGCCATATACTACTAGTTTGAGGCCAGTCTGCGCTATAGAAGACAGTCTCACCCCTAATAACGTCATGGGTTGCTAATCTGTGCGCCATCATGGATGAGTTTGAAGCATTATGCTCTTTTGCACGTGGCATATTTGACCTGTCTTGCGCTAGTTGCACCTAGTGATAGCAGCTTTCCTGGCAAACATCCCATCTCCTGGAATCCCAAATGCAACCTAGTCTTTTTATGGCCTCCTTATGTGGGATCTCTCCCTGCCATACATTTGCCTTCTTTCCTTGACTTTCCATAACCTTGATACAAGTTTCCATGAATCCTGTTATATTTTGCATGATGCAAAAGCAGCAGTATGTTGTTGATACCAAGTTCTGCTGCCATTTTTAGGTGCAACCTGGGGGCATTTAACATCCAAATCGTAACGACCTGGTCACGAAATAGGTGACCTCAGTGGCTTGGAAACTAAGTGAAGTTTCTGAAAAATTAAGAAAGCAGATAGGATCAGTTTGAAGAACTAAAAGTCCGAGGAAATGAAGTGAGCACAGGACACCAACGTGACTTGTGGCAGTTGGCTGTCTCCTACTGTATGGATCACAGGGATCCAGTTCTGCTCTCCATGCTTGCTAGCAAGTTCCTTTATTCATTGGTGATCTTTCTTACTGAGTCAGGGTCTCTGTGTCCCAAGCTGACTTTGCACTTTGGATCTTCTTGCAGGTCTTAGTTAGGGTTTCCATTGCTGAGAAGAGACACCTCAGACACTTTGAAAGAGATCAAGGCAACTTTTTTAAGGGACAACATTTAAAATTGGGGCTGGCTTACAGGTTCAGAGGCTCCGTCAGGTATTGTCATGGCAAGAAGCATGGCAGCATCCAGGTAGACACAGTGCTGGACAAGGAGCCAAGAGTTCTACATCTTGAACCGAAGGCAGTTAGAAAACTATCTTCCAGGCAGCTAGGAGGAGGGTCTCAAAGCCAACAACCTTCACCTACACCCCGCCCCCTCCACACATACACAGTGATACACTTCTTGCAACAAGGCCACACCTCCTAATGTTGCCACGGCCTGGGCGAAGCATATTTATACACCACCACACTGCATTCACTACCCAAAGAGACTGTAAATTACTACGCCCAGTTCTTGATCTCTTTAGTACCTTCATACATAGACCCAGAATTTTTTATACCCTGTTTTATGGTTCCTGTGTAAGTAGCTTCTGAGTGTCCCAAGAAGACTCTCGCCCTCAAAGTGCTTGCCTTTAGTAAATATCAAAGGGTCATGAGCACATGTCTGTAATCCTAGCCTTTGGGAGGTAAAAGCAGGAGTGTCTGTAATTTGAGGTCACTTGGGCTGCATGATACACTGTCTTAGCCCCTCCCTTAAAAAAAGCCATAGAGAAGGAAAATGTTGAACAAGGGTTAAAGAGCTCAAGAGTAGTGTGAGGAGTTGGTCAAGATAGGTCTGTTGAGGTGGTGTTAAAAGAAAGACTTGTCATAACCAGGCTCACAGGAAATGCAGGGACAAAAAAACAGAGCAGAGACTGAAGGAAAGGCCATCCAGAGATTGTCCCCCCTTGGGATCCATCCCATCCGCACACACTAATGATGCCAAGACATATTTGCAGACAGGAGCCTGGCATGACTGTCCTCTTGAGAGGCTCTGCTAGCACCTAAGACAGATGCAGGTTCTCACAGCCAACCATTGGACTAAGCCTGGAGACCCCAATGGAAGAGTTAGAGGAAGGAATGCAGGAGCTGAAGGGGATTGCAACCCCATAGGAAGAACAACAGTATCAACTAACCAGACCCCTCAGAGCTCCCAGGGACTAAGCTACCAACCAAAGAGTATACATCTGCTGGTTCATGTAGCAGAAGACTGCCTTTTCTGGCATCAGTGGGAGGGGATGTGCTTGGTCCTGTGGAGGCATGATGTCCCAGTGTAGGGGGATACTAGAGGGGTGAGATGAGAGTTGGTGGGTGAGAGGTTTGTGGAGGGGGGACCAGGAAGGGGACACTTGAAATGTAAGTAAATATAATAGTAATAATAATAGACTTGTAGGATGTATGGGAGGACAGTCACAAAAATAATTGGAGAGAGCGAGCGAGCAAGAAAGCGCAGAAGATAGGAAATCAGGAACATATCAGGGTGGTTTTTGGGAATAACTGAAAGGTCACTGTGGTCACACTTGTGGATAAAAGGAAGTCAGATCATCAGGTACTTCTGAACTAGTAGTGAAAACATTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCCGTAAGGGGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTTAAAAAAAAAAAGAGAAAACATTGGGACTAGTATGTAGCTCAGGCAGTGGAGTGCTTACTTAGCATGCATAAAGCACTGGGTTCAGTCTCTAGTACTACATGAAACTTGGCATGTGTGTATTCCTAGCACTTGGGAGGTAGGAAGATCAGAAGTTTAAGGTCATCCTTGGATCAAAATGTTTGAGGTCAGTCTGAGATAAATCAAACTTTTTGGGGGGGAAAAAAAAGTTTGGCTGGGCAGTGGTGGTGTACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGACTACACAGAGAAAAACCCTGTCTCGAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTCTTTGGCACTGGGGATATAGTTCAATGGTAAATAACTTACCTAGTAAAAAAAAAGCTGTTGAGAGAATAACAAATCTGATGATCACTTTTATTTTAATCTCATTTATGAATGCAAACTTAGATCACACCCAAGCCTTCCCACTATCTTTCCAGTTCCATTTGGACTTCCTTCCCCAAGGCTATAGGGTTTTGATTAGATTTAAAGAAATAGCCGGGTGTGGTGGCACACGCCTTTAATTCCAGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAATAAACAAATAGGGCTGTTTAGATGGTTTTGTGTCATCCAGTGCCAAGAAGGCTCACCTGCGTTCAATCCCGATGTCATAGTGAAAGGACAGAACTAACTTTAATCCCAGCAGTTTGTCCTCCCACCCCCACATTTTAAGTTTTAAAGAACTATCTGTCTGAATTTAGGTATATCTATCCTTATCTAGTATATGAGCATTGTTTCCCAACAGGAAATACTACTGTAATTAGATTTCAAACACTTTATTCTTTTGAGGCCTAGTTGAATCTCTTTTGCGTAACTTTTTTTTTGATCTTTACTTTTTTTTAAAAAGTAGGCTGTGGTAGATTTTTAATAAACATATTTCATAGGTATATTAAAAATCTTCTCTTAACCTGTTCCTCTGTGCTCCTCTTCGGTATGTGTATATTTTGAGACATAATCTAGGGTCATTTATTGATAGACAACACTGTGTATCCCAGAGCTGAGCTAAGTTCGTGTGGCTGTTAGTGCTAACCAGACCCCTCAGAGCTCACAGATGAATGAGAGACGTTCTTGTTGGATACTGCAGGAGAGGGTTGTGAGTTCCAGACATTAGGTGCCTGACTTTTCCTCTCTGTAG
Seq C2 exon
CTCAACAGAGCATTTCAAGAGGAGGACTCCCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437:ENSMUST00000026507:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.8=35.1)
A:
NA
C2:
PF063377=DUSP=PU(26.8=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types