GgaINT0039355 @ galGal3
Intron Retention
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12019425-12020122:+
Coord C1 exon
chr8:12019425-12019532
Coord A exon
chr8:12019533-12020068
Coord C2 exon
chr8:12020069-12020122
Length
536 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CTGTCCTTATTCTTTCTTAGGGA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GGACATCCTGGTTTGATTGGCCTGATTGGACCTCCAGGAGAACAAGGTGAAAAGGGTGATAGGGGTCTTCCTGGTCCACAGGGGTCTCCTGGAGCCAAAGGTGATGCA
Seq A exon
GTAAGTAAAACACTCTTTTGCTTTCATTCAAGTTTCATGTATGTCTTTCTTGCAGGAGACACATGAAGTTACTATAAACATTGATACTCAGAATCTCCAGCTGGAGTTTAAAGCTTTCATAGGCATTGTATAAACACAAGGTAAAACCAGGACACAGATTGTTGATGAAGGAAACAGTATACCTCTGTTAGGTATCAGATAACTACCAGCGCCAGTCTTGTTACATACTACCCAAAGCAAACTCTCTTTTCCTGGTTATTAAGCTATGTTTTAAAACTCTCTGTAAAATATGAAGCTTTAACGTTTATCTGAAGGAGAACAGTGTTGTGACTATAAATGCTGGAGCATGAGAGACACTAAAACTGTCAGATTGTATTTTAAATTTAAAAATTATTTTGGACCCTAGCAAATGGACTAAAGGGAAACTTTAGTTTCAGGGGTGGGCACTTAGTAGGACTACCATTCTCAATAGATCTACATTTCTTAACTCAGTCCAGTACAAAAAATACTTTAATTCTGTCCTTATTCTTTCTTAG
Seq C2 exon
GGAATTTCTGGTCCTGCTGGTCCACTCGGACCCCCTGGTCCTCCTGGTTTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180:ENSGALT00000008321:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.0=13.9),PF0139113=Collagen=FE(54.7=100),PF0139113=Collagen=PU(7.9=13.9)
A:
NA
C2:
PF0139113=Collagen=PD(14.1=50.0),PF0139113=Collagen=FE(27.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]