GgaINT0039827 @ galGal3
Intron Retention
Gene
ENSGALG00000004290 | ANGPTL1
Description
NA
Coordinates
chr8:6645568-6650718:+
Coord C1 exon
chr8:6645568-6646390
Coord A exon
chr8:6646391-6650521
Coord C2 exon
chr8:6650522-6650718
Length
4131 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTACAGCATTTCTCTCCAAAAAG
3' ss Score
-7.67
Exon sequences
Seq C1 exon
ATGAAGATACTGAAATGGACCTTGGGTATGCTGTTGTTCCTACTGTTGTCTATCGGGCGCTGTACAGAACCATCGACCCTCAACAAAACATCCCAACGGAGACATCCTCGTTCCACAGATGGTGGAGAGGAAGGGAGGAAATGTGGTTACACCTTCTTGGTCCCAGAACAAAAAATCACAGGGCCAATCTGTGTGAATAACGAACCAGGTACTGGTAACAGAAAAGATGAAGTCACAAGAATGGACATAGAGAACTTGAAGGATGTGCTGTCCAAGCAAAAACGTGAGATTGACATCTTGCAGTTGGTGGTAGACGTGGATGGAAACATTGTGAATGAAGTAAAGTTGCTGAGGAAAGAAAGCCGTAACATGAACTCTCGGGTCACTCAACTCTATATGCAACTCTTGCATGAGATAATCCGAAAGCGCGATAACTCACTTGAACTTTCCCAACTGGAAAATAAAGTCCTCAATGTAACAACAGAAATGTTGAAGATGGCAACAAAATACAAGGAGCTTGAAGTAAAATATGCAGCACTGACTGACCTTGTAAATAATCAGTCTGTGATCATCTCCCTGCTGGAAGAGCAGTGCTTGAGAATCTTCTCACGGCAGGACACCCATGGGTCCCCGCCGCTTGTCCAAGTGGTGCCGCAGCACATTCCCAACAGTCAGCCTTATACTCCCGTTCTCCTGGGAGGCAATGAGATACAGAGAGACCCAGGGTACCCCAGAGACAGGGATGTAAGGCCACCACCTGACCCAGCTACTTCTCCTACGAAGAGTCCCTTCAGAGTTCCACCACTGGCGTTAATTAACGAAG
Seq A exon
GTGAGTAACGTACCGCTATTTGTCTAATATGACATTCCTCCATTTCAGAAGGAAACTGTCCTGATTCTAAGACTAAAATGAAGAATTAGAGGTACCTTCCATACTAACCCTTCCTCCAGACTGAATTTCCGAATACTGGCTATTTCAAAAAAATGCATGTTCTGCAACTGTAGCTTAAAATTGCAATTTGTGAAATAACACCTTTGAGTCACAAAGTGCTGGGGCTTGCACCTCTGATCTGCTTTAAGATGAGCACTGCACAATGGCACAATGACTAAGGGCTTGGATGAAATACTTGAGAGTGGAACAAGTTTGAGAGGGCAAATGAATGGAGGCTGGGTCTAATCAGATGCACTCAACTTGGAAAATTTGGAATGAGTAACTAAGTTCACAACAATCTGGTGTTAGTAGGATGTCAAGTTAGTATCACAAACACTATGAAAACACATGCAGAGGACTTTTATCACATTGTCATGTTACCTTCCTTAGACCATTACGTAAATTCATTTTTCACTACAAACAGAACCACTGACAAGAAAACTAACTACTACTGAGACGTCCTGAATTCAATCAAAAGTCAGTTAAACCCTTGTCAGAATTACAGAAAAAAAAAAAAAAGGATTCAGAAAACACAAGTCATGCTTTTTGTGGACATCCATACTAACTCTTGCTTTCAGCTTCTGATAGCTTGCACAGCAGGAATAGTTACTCCTTCTGTTCACCCTTAAATTGCCTTTAGTTACAGCTGGAAATTCAGCTTGGTTCCTAAGTTGAAAACAAACATACATTTGTGACTGTCCCACAACAACACAAACAACTAGCTGCTGACGTAAAGAATAACTACTTTTATTCAGATCTACAGAGCGTTCAGGCACAAGCCCAACTCAAATGCCAGATGTCATGAGAATTTAAGTCACACATCATGACACAAAGGGAACAGCTAATATAAAAGCATTAACGTCTGGTCATACAGCAAAAGTATAATTCTAAAAAATAGCCATTTCGTGTTTCCCAGAAAACCCATGCTTCACAGTTGCGTGTTTTTTTTAAGATGTATCATTTTCTCTCATTCCATGTCTGCTGTACATGTGAAATAAGGCAGATTAAATTACCTACTAGTTTTCATTGACCCATTAATTCCTAGAAGTCCAGAATTTTAATCCATTTTTGCAGAGGAGCACAAAGCATGCTAAGGAAGATTACATTATTCAACGAAATACTTGCATGCAACAGGTTTATGGAAAGGTCAATGTGCATTTTCAATTGCTAGCGGGGAGCAAAATTCAAAAACACTGGGGGAACAGCAGGCCAACCTTATTTTCAGAATAGTTCTTTAATTTGCATCAACACTGCTCCAGAAATTGAGGAAGAATTTTCTGTGAATTACAGTTGCCACAGTTATCTAAATGCTTGTGGTAACAGCCAACATCCCCAAATTGTCCTGCCTTTGTGTTAAAGCAAAAAAGCAGCTACCAATTGAACAGGTACTTGAAAATTTCACGTGCACAACCCACTCTACTGCTAATACCTCCCAGCTAATAATACAACTGAAGTATATACCCTGTTTAATTTTGGGATTTTCGTTCACTGCTGACCACAATCCTCTGTGTGAAGCTTAAACAAGCATCATAAAATACTATCAGATCCATCAAGTTATTTCTAACTTAAGAACTAGTTAAAAGCTGTAACTAAGAAGTCAGTTTGCCCCAACAGCTTAGTATACACAGGCTGTTACAGAACACACAGTGGAGTTGGATTAGATGATCTCCAGAGGTCCTTTCTTGTCCATACATATCACATAATCATAGGAGATTTCTATTCCTTACATAGGCAATACATTTTTAACTAAACTTAAAAGCAACAGAATTTCAAAGGTACAGCTTTTTTTGATTAACCAGAAACCCTGCACCCACATCAACACTATGGTGAACACTGTGGGAATCTTTCACTCTTTCACAATCTCAGCATTTGCACCAAACAAGGAATGGGTCCCTTCTTAGACCAGGACCAGGAATTTAAAATAATTGGATTTAACAAGATTTACTCCTCAAATAGAAAAAATTCAGACTATGTCATGGGATTTGATACATTTCCTAATGCTGAAAGCAGAAGTTTCTCAACTCCACTACAAGACTAATTCACAGTAAGGACACAGACAAATCTGAGCATCAAAAAGCAGATAAATTACATCCTATGATCTTAATACCAGTTGAATTTCAATGGCTTTGGCTAGTATAATTTGTCTGCTGTGAAACCTAATCACTTAAAATCACTGCAGCTCAGTTCGCTCATGCAAAAATGCACCTCCCATTCCTCCTCAAGAGGAAATTATAGGAAATAATACATGGCAGGTCTAATTGAGCTATTTTCAGTGTTAATATTATTAGAAACCTACTTCTGTGTACACTTCTTCTAATGCAATAATTGCTTCACAAGAATACTTGCAGAGTGACCTCTGTGTTCAGTTATACAGAGCCCAATTTTAGGCAGTTCAAGGAAAGGAAATGACATCAAACTTAGCTTAGGAGGTGCATAAAGAAGTTGCAATGTACACTATCTACATGGAAATTAATTGTGAACAAGGGAAAAAGTACTCACATAGCAAAGCTACTGTATTTCTTTCCTAAACTATTACCACAAGCGCTAAAAGAATGACAAAACATCATCATGTACTGACTGCACAGTATGCACAGCGCTACAGCTCAGTGCAGACAAGTTGCACTGCTGCAACCAGAAGCTGCAAGTCACCTTCTTCAGATACACAAACTTCCTGCATGCTAATTAATATGAAATGTTTTACAGATTTCATGCTAACTACAGACTTTAGGTAACAGGCAGCTAAAACCTTAAAAAATATATTAAAAAAAAAAAGGAATGCTTTTCAATTTACTTTTGTCTTGGAAACTTTATCTGCAATGAAGGTCACTTTCACTCAACCTCTGCTTTTAATTAAAGAAACTCAACTCAACAACAACCTTTTATGCTTCTTTGCACATTAGCCTCTTCTGTGACTGATGAGAATTTTCTCTGAACTTCCAAGCAGATTTGAGAAAATGAGCCTTAAAAAAAAATAATGGGAAGCAGTAGGTCATTTATTTCCAGATTTACTGAGTTTGAGCTTTCAAATACCTTTAAGGCATCCTCCACTTACTAGCCATCAGAGCATAACCTGCTCTGCATTACTCAATAGCTGGTCTCTAATCAACTCAACCAAAGTAACAATACATGAACAGACATAACTAAAGTATTATCAGAAAGTGAAAGGCAAACAAAGCAAAGATTTCAGAGGTATGTAAGCTGCATTCCTCTTATTGTATGCACTTCTGTAAGTAGTAGTTGTAAAGCCTGTATTCATACGCTCCAAAATAGAGCTTTCAAGCAGCCCTGTCAACAGCACTTTCTAGAACCACGAACCTGAAAACATGTGTGTGTGCCCCATCTGCCACCACTTGCCTATTTCCTCCCTCAGAGCAGCACTTCCACGTGTAGCACAAATGGACAGCACATGAAACTCACACAGACTCCTACCTCCATTTATTTAGCAGGCTGCTCCTTGGACAGAGTAAGAACATAAAAGCAAAAGCGATGCAGCGTAAGAATACTCCGTTTCCCTAAATTCCACATCTGTACATTCTGGCACTAAGTAACTCCCTAACACTGTGTGTTCAAGTGTGGGAGGCTTTGTTTTGGTTTGAGTGTTTTGTGTCTGGTTTTCTTCGGCTTTGCTTTCAACTGACCAGTTTTCACTGAGTACGCTACGTCATTTATCTTTGGTATAAAAGGGGCAAAAGGAGAAAACAGTTGATGCAAAACATAATGCACATCTTCAGCGCCAGGAGTCAGAGAATAAATCCTTGCCAGAGACAGTTAAAAATCACATGCTGATAACTGAAGTGTGTTATCTGTTTAGCAAAGTGATTATTTTATTCAAAATAGAATACGATATTTATTTTTATGTTTCATAGGTATTCATACAAAGCAACTTTTTATGCTGTTTTTCCACAGTAATTTTACCTTAATTGAATTACTGATTTTCCATTATCTCCAAGTTTTTCCACTGCAAAACCAAACATGTTTGAACCATGTGCAGTGCACAGCCAACCTCGAACGCTTACAGCATTTCTCTCCAAA
Seq C2 exon
AAGGTCCGTTCAAAGACTGCCAACACGCCAAAGACGCTGGGTATTCCAACAGTGGGATTTATATGATCAAAGCCGAAAACAGCAATGAACCAATGCAGCTATGGTGTGAGAACAGCTTAGACCCCGGAGGATGGGCAGTTATTCAGAAGAGAACAGATGGATCTGTCAACTTTTTCAGGAACTGGGACAGTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004290:ENSGALT00000006824:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF101464=zf-C4H2=PU(95.3=73.5)
A:
NA
C2:
PF101464=zf-C4H2=PD(4.2=13.6),PF0014713=Fibrinogen_C=PU(29.3=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]