MmuINT0015017 @ mm10
Intron Retention
Gene
ENSMUSG00000033544 | Angptl1
Description
angiopoietin-like 1 [Source:MGI Symbol;Acc:MGI:1919963]
Coordinates
chr1:156844580-156857276:+
Coord C1 exon
chr1:156844580-156845425
Coord A exon
chr1:156845426-156857082
Coord C2 exon
chr1:156857083-156857276
Length
11657 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATCAATATTTAAATTACAGGAC
3' ss Score
5.66
Exon sequences
Seq C1 exon
ACGCTGTGGTAGAATTTCATTTCAAAATGAAGGCTTTTGTTTGGACCCTAAGTGTACTACTCTTCCTACTGGGCAGTGGTCATTGCAAAGGAGGACAACTCAAAATAAAAAAAATAACCCAAAGGAGATATCCCCGTGCTACTGATGGGAAAGAGGAAGCAAAGAAATGTTCATATACATTCTTGGTACCTGAACAAAAAATAACAGGGCCAATCTGTGTCAACACCAAAGGTCAGGATGCAGGCACTATTAAGGACATGATCACCAGGATGGACCTGGAGAACCTCAAGGATGTGCTGTCTAGGCAGAAGCGGGAGATAGATGTCCTGCAGCTGGTGGTAGATGTGGACGGGAACATTGTAAACGAGGTGAAGCTGCTGAGAAAGGAAAGCCGGAACATGAACTCCAGAGTCACGCAGCTCTACATGCAGCTACTACATGAGATCATCCGTAAAAGAGACAATTCACTCGAACTTTCCCAGCTGGAAAACAAAATCCTCAATGTCACCACAGAAATGCTGAAGATGGCAACAAGGTACAGGGAGCTAGAGGTGAAGTATGCGTCCTTGACGGATCTTGTCAATAACCAGTCTGTGACGATCACTGTATTGGAAGAGCAGTGCCTGAGGATGTTTTCCCGACAAGACCCCCACGCGTCTCCCCCTCTTGTCCAGGTGGTACCGCGACACAGTCCTAACAGCCACCAGTACACCCCTGGTCTGCTGGGAGGCAATGAGATACAGAGGGACCCAGGTTACCCCAGAGACGTAATGCCACCACCTGATCTGCCAACAGCTCCCACGAAAAGCCCTTTCAAGATTCCAGCAGTGACTTTCATCAATGAAG
Seq A exon
GTGAGTTACTGCTTCCTGGCCAATGGAAGAACGAAGCTGGTATGCTGATGCTGTATGATTCACGCAACAATACTCTTATCTTAGTAAGTCCTACTTCTTATGTGCTGATGCCATTATACATGTCCAATCAAAATTTTCACTTTTTAAAGTGATGTTTGGATTTGATATAAAACATCTCTTTTCTCCGTGCTATAAGTTTCTAGGTGTTTATAATTTTTCCCCTCTGTGGGAAAAAAAAGCACTCTGCCACCCAAATTCTTACAATGGAGGCTGCTGTCAAAGAGAATGACCACTGACATATAGCTGAAGGAACTCACTCTACACCCCACTTTGCGGCCAGCTCCACCGCAGCCCCACCCTTCAGATTCCCACTGCTTCCTCTGGCCTTCTTGCTGTCTTCAAAAGGAGTATTTAACCTTGTGCTCTCCTTGTCCTCAGGCCTGCAGTCGTCTGTCCTTATCTCCACTCAGGGTGTGCTTCCTACACTGCTCTAAGTCTCATCAGGTCCTGGGTTCTTGTTCTTTCAAACTTCAAAACACCTATATAAAACCTACCTTTGCTACCTCAAGAGAAAAGGGGAGTCTTGTCTTCCAAGGCTAAATGATACTGAGCACCCTGCCTTCCTCTCACTGCTCTGCTCTGGCCCTGACTCTGGGGTGAGCACCCAGTGCACAACAGAGTCCCGTGTTTCACTTAGAACTGTCACATGTGCATCCGCTGTCCCACAAGCCACTCTCCTGAACCTGTTACATTACTGCTTCCCTACAATGGGGGAGGAGGGACTCAGATGCCCACAAGGAAGATGAAAACTCATTTACATAAGGAAAGGCAGGACATAAAAGCTGCACTAGGAAGCCACCGCACGCATGAGGCTGTCTGCAGCAATGGCATCCACTGACACATGTGTCCTTGCGCCTGGCTTCCACAGTCACATGAACAAGCTGTCTTCCAGACTGTATTTTAGAGCTCCCCCACATCTCAGGATGGCAAGGGTTACCTGCCTGCTGGTGTAGGAGCCGCCTGACTGTGGCAAGGGTTCCTCTACTGAAACAAGTGATCAAGGCTCACCTCAAGGCTTTCAAGACTAATGCTAAGACTTCCAAGAATCAAACAGACAATACTGAACTTCTCTTTTTCCACATCCTAGGCTCTTTCTTTCCCTCTTTTCTCTGCTTTCTGTCTTCTGTACCACACTACACTGGAGTTACTGAGATCCATTTGTTTGCCTTCCTGTGGGACCAGGTTTGGCATACTGTGCTCATCGTATGTGAAGAATAAGTAAGCAAGTCCTAAAACAATCATCTTCTCACCAACACTTTCCTACAGAAGCAATTATAATGACAAGAATAACGCAGGCTTGGGTGGTGCATTCCTCTAACTACAGCATGGGCTGAGAGGCGGTGCAGAGTTCCTAACTCCGAGGTCATTTGGGCTACCAAGAGAAATTGTCTCCAAACAAATACATATTTACTTGACAAAATCTAGAAAATACCAACTATCTTTTAAAAAATGCTCAACAGCCTAAGAAGCAGAAATAAACAGTTAACATTTTATTCATTTCTTTTATCTTCTTATAAACATGGCTATCAATATTTGTTTAACCTTTAAAAACCACTTTGTTTTCTGAAGATTATATTCTTAAGACACATTTCTCTGAGTAAAACTGACAGACTTATCTATTTGATCCTCACCTGTCCCATAAGCACAGTCACCTGAATTCTACTCAAGTCCCCTGTAAACATTCAGAGGCAAAACAAACTGGTCATTTAGATCCAGAAGCTGGAGGGGAGGGAGCGGGCGTGGGAGTAACAGTGCTGGGTCCTGGCTCAGAGCTTAGTACAGAAGTGCTGCAGCAGTGCCTGACACATCCTACCCAGATGTCTAAGTGCTTGCTGACTGCTCCCCACAGCCATTCCCTTGCAACACACTCTGCACTGGTACCAGCCTCCTTTGTAAAGCATGCACACACCGTGCTGCTGCTCATCAATTTTGTGCAAGAAAAACCCAAGTGTAGCTGTCCTTTGCTACTTCGTGGTTTCTTCTTTCTTCCACCCTTTCAACCCCCTAACACTAGATAACAGAGAAAAGGGGATAAAGAGGAAAGGAAAGAGATCCCGGAATAAAACCAGGAATTGGAAAGGGGGTGATGTTACCATTAGACCATTTCCTGCTGGTTAGAGATGTCAATTTACTTAGGGCAAGTTTGATCTTAGCTCTCAGGATATCTAATTTCTTCTTGTTGTTGTTTCTTCTTTGTGCACAAGTACTTAACAAACTGCAACCAACAACAACCAATCAGGAACCCCATCTCTTGGGGTCCTAGCATTTATATAACCTCCCCCTAAATTCTAAATGTCACAATCGCAGAAACTATCTACAGCTGGCCAAACCATGATTCTGCTAGAGCAGACCCATAATCCCCACAACTGGGATTAAAATGATAACATTCTCATAATATTTCTGTGTTTTTTAAAAAAACAAAATTCTGGAATTCTCACTACAAGAAAGTCTCATTTTCATTTCACGTGCTTCCTTCAAAAAAATTGTTTCAACAAAACAAATCCACTTTTTCCTTCTAAAACTCTAGTAGGACTTCTGTCCATTCAAATGATAAGGATGAGACCGAACGAATGAGTACATGATGTAAACAGAAGGCCCTCCGTAAGCCCTAGTTGACCTCACAGGCCTGAAGTAGTTGTTTATAATCACAAACACCTCTACTGTCTGTAACACATACATTTATTAAATTATCTCACCTTTACAAGTAACCACAACCCATCTAAGTGAGAGGCATTCTAACACATAAGCTCCTTCCTGCATTTCAACTGCAGGTGCTGAAACATTACATGACTTGATAACACAGAGCCTCTTAGCGTGGTCAACCTAAAGACCTTCATGAAAACAAGTGTTAAGAGCAGCAAGAATATCATAAAATTAGGTCAATCAGCAACTCAAGCCCTTTAATTTTCAAAGACACGTACAAAACTGTCCACTGGACTTAGAAAGGAAAAAAATCTTTCCCATTCATTTCAAACTTACATTTTATTAAGTTTTTAAGACATGATATGATTTATCAGGATAGCAGTTCCTATAATATTTATAGATAAAGATAACTCCTATGTATTTTATTAAGCTACAGTAGGTATAGTTATAGAAGTGTAGAAACAGCTGCTGTTGAGTTTTTAAGTTTAAGTCAGTGGCATCATCAATTTTAGCAGAAATGAAGAAACATATTTATTTATAACAAACAAAGGAAATACTTTACAGAATGAAAACATCAGCTCTAGTTTTTTCACACACTGAGCATCAGTACAAGAAAATGCATACAATTAAATACATCCATACAATTATGCATGCAGGGATACGGCATACCCAAGGCCAAAGTTTATCTCACTTTTACAAGAAACGGTGCACAGAGTAGTCCTAGGAAATCAATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTATGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCCAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTTGATAAAATCTTGCTAGTGTATGCAATGGTGTCCACGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGATCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCATGAGTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAGGTTAGGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCTAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTTCAGAGTGGTTGTACAAGCCTGCATTCCCACCAACAATGGAGGAGTGTTCCGCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCTCATTTTTTAATGGGGTTATTCGATTTTCTGAAGTCAACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCACTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGAATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGACTTTTTGCAGTCCTAGGTTTTTTGTTATTCCAGATGAATTGGAAATCAATTTTTAATGTAAAAAATTCAGCCACAGAGATAACTTTCCAATATTATTTTAAGTAAGCATTCCCTTCCATTTTACTCTATAAGCCAAGTGACATAATCAGTTGTATCATAACAAGCAGCCCTCCCTCATGACAGAAACTTGAACAGACCGATGCCTGTAACCTGCTTCCCAGTGCTAACACGCTGATTCCTAACAAACAATTCCTAAAACAATTAATAAGCCTACTGTTTTATCTCTTTACATAGTAGCTTAAAACAATTTTTGCAACTCTAGGGGAAGTGTCTCACACTGGAGACTTTCAAGGAAAGAACAACATAAATGGGTACTGTGCTTACATGTCGTGTGACATAGGTGGCTACTGTACTTACACACGCTCTGACAGATGCTGCTGCTGTGCATACACACACTCTGACGTAGGTGGTTACTGCGCTCATCCATGCTCTAGCACCAAGTGACTCACTGTAGTGTGGTACACATAGGTAGCCATGCTAGAGTCTCTATATGCATGACAGAAGACACACAATCCATTCTACCTAAAAATTAGTAAGCTGGAGTCAAAAGCCGGCACAAAAACTATGACTCCACTTAGGTGAGATACAGGGAGAGTCAAATTCACCCATGGAATCTAGTTTTCTGCTTTGAGAAGAATTAAAATGTGTATCATGGGAGATGAATGAATCCTATTTCAAGATTACTGCATCCAAGAAGAGGGTCTGCATTCAAGATAAATATGATTATAGAGGAGATACTGCCTGTGTACATTCTTTGAAGCACCAAATTTCTGAACCAGAGGTAAATTTGGATTTTCAAAAATAAAGCTGATAAGTTTCTAATAGTAGTTTTAAAATTTTTTTGTTAAATATGATCCAGAGAAAGAAGTTAGTTTCTGTTTAAAAAAAAACAAAACAAAACAAAACAAAACTATCATCTAATTCTAGAGCAAAAAATTTAAAAGGAATGAAAGTAACAATAAGAAAATGTTTCTGCCAAGATCAATGAGCTGATGGTATAATTATAAAACCCAGTAACTGAGCTCTGATAGTTACTGTCTTTTCTAAAGAGGAGAGAAGGCACTGTCAAGTTTATCTGTCTTCCACAAAATAATTTGAACTAAAATTTCCTGAGGTTTTGTAAGCCTCAAAGATCCTGAAATGTAAATACAAGGTCCACTGTCCAAAAGTGGATAAATTAGTGAAGCTGAAGATAAACTTAAATTTGCCTGTATTAGAAGTTTTATCAAATGAAAACTGAACTCAGATAAGCTAGTATTCTTCAATTTATCTAAACACCTAAACACACGTTAAATAGCGGAAAATAAAAACAGTTCTCTGGTATTTAACAAAACCAGGCTAAAACAGAATCTTTACATGGCCTCCAATCTAAACTTTGAGAGCAGGCAGTAAGATCTCAACAAGCAAAGCTTAGTTCCAAATCTCAGACATGGGAGCTACTCGACAGGAGCAGCCCTTGGGTGCAATGCTCACAGAGCCCCTCGTGTGCCATTAGTAGCATCAGGTCTTAAAATAAGAATTTACAATAAAGTAAAATATGCTCCTTAGACACCCTAACTTCCCTAAAAGTAGCGACTCGGGAGCACAATGTAGCTAACTTTAGAGATTCCACCATGACTGTTTTTAAGTAAAACCATCGAGCACATGAGTGAGGCAGTCTCTGGCCCACCTGAGAGGCTATAAACATCATCCTGTCGTTTATATTTCAGACATAGGAAATGTACAACAGCTGTGGAAGACTAAACATACTTCAGCATGTAGCCCACATGTGGCTTAGATGAGGTCCCGAGACTCCCAACGGCCTAACTTGGATTCAGTATGCTGAGCTCAGACAGGAAGACAGCAAGGCCCTGCTCAATCTCAGCTCTCAATTCACACTCTTACCACGAGTTCTGCTTCAAACCTCATTAGAGTGCTTCGCCACGCTGTGTGGGAACCTTTTCTTACCACTTCTCTCATCTCCCACCTAACTTCAGGGTTCTTCATCTGTCTCGGGACCTGAGTCTACCCTGCACTAGATTCAGAAAAGATCATTCTTTTAAATTAAAAAAAAAAAATTGTTCATTTGTATTTAGCCAAAGGTTGACCCTGGGTGTCCTCCTTTTTGAGATAGGAGGGTCTTTCACTAAATTTGAAGTTCCTTGATTTGGGTAAATTGGCTGGGATTTCCTGTCTCTGACCCCTAACCCAGTGCTGACACTACAGACACTGTGTATGCTCGAGTGTCTGGCTCGTGCGAATGCTGGGATCCAGACTCAGTCCTCACACTGTACAGAAGGAAAGTTACAGTCTGAGCCTTCGCTCCACCCTCCAGAAAAGGCTCTTAAATGACAATAGAAACCCAAAGACATTCTGAAAATGACCACCATCAGAAAAGTTAGTATCTGAGGGTCCCCCAATGAGCTCCAACTGTGCACGGCCAACAAAGAAAAGGTCCTGCCTGTGCATTCTGCTTACTTGACATGTATCACATGACACGCAGGGAAGCCGGAGGGTGGGAGCGGGGGCCACTTCATTTTCCTCTCCACTGCTCCTCCACAGGCAACATCACAGCGTTCACCCTACCCGAAATGGAATGATTCTTCTCTGCCTGACAACACATGGTCTACAATGTGAAATTATTCTTATGTGATTAAGGGAAAGAGAAGGGGTGACATCAATATCTGAGGTGTTTCCCTATAGTATTTTGTGGTGCATGGAACACAGCAGAATGTAAAGTATGTTACTGGCTAAAATCAGCTGTTATTTTTAATCTATGAATTTTCACAACATGATCATTCAGTAATGTTTTATTTCTGTGACAGAAATGACTATATCATAACCTTCAACTAGCCGGACTAAACAGCTCAATGAGCATATATGTATTAAGTAAAGATATTTAGTACAGTACTTTTGCACATGAAGGTTAGGGACAAGAGAGGCAAGAGGGACTGACAGTCCCTGGTGACACTGGCTCTGTTAAGCACAGTGTTCACACACAGTCCCAGCGCTTGGATGCTGAGGCACGAGCATCTGGAGACCAAAGTCTGTCTCAAAACAAGGAGAAAGGAAAGAGGAAAAGAATCTCTGAATACTTTGAGAACTCTGGAATCCACTCATGACTTGAAAAGAAAACGCTGAACCAGTTACAGCAAAGAGGGCTGTACTTCCAGCATTTGGGAGACTGAAACAGGGTGACTGTGTTTACAGACAAGCTTGTACTACACCACCAGTCCCAGGTTAACCTGGGCTACAACATGAGATCCCATCTCAAAATGAAAACAACTTTAGCAAACTAGGGAATGCAAAAAACAAGAATTATATATATATATAATTTTTTTTTTAGCAACTATTCTGGAGGCCTTCATAATAGACACAAAACCAAGGAAATCCCAGAAGAGAAAAAAATGAGCCAATGAAACTGAGAGTAAAAAACCCACAATACCTAATATTACCTTTTAAAAAATTGTTTGTTTGTTATTTATTTATTTATTTATTTAATGTATGTGGGTACACTGTAGCTATCTTCAGACTCACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGACACCATGTGGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCATTCATTGCTGAGCTATCTCTCCAGCTCTCCTAATGTTATTTTTAAAAGATGCCATTTTCCAGGTTATATTTTTACTAATAATCTATAGTACAGATGGACACTGATAATTTTAAAATTTTGAAAAAGCTATATATGAAATATAAGACTATGGGGTCGAGACTCTGACCCACTCAGTTTGTACATATTGCTTTCCATTTCCTTGGACTTAAAACTAAAGGACTGATTCATTGACTTAACAACCTTGGCTGATGCCCAGTTGAAACATGGAGAGAGACGTGAAGTCAGCAGAGCACGGCGACTCCATCCTCAAGAGGCAATCCAGAAGGAAGAGCTCACATTCCCCAAGTTGCCTCCAATGACAGACACAATGAATGGTGTTTACATAATGAAATTAATTTATCTTAGTAAGAACCAATGGGGACAATACTATGTATTGTTATCTCAAAACTTCAGCAATCTTATTAAAATTATAGAGCAGAAAAAAATCTTAAGAATTCTGACTAAACTAGTTTCAGATACTTAAAAATTACACATCAGAATTTTAAAATATTCAGTAAAAATTTTTGATGAATGCCTTTAAAACTCCCTTGTTCAAATATATCTATATTTAGCATAATTCTTTTTTTCTGAGCCATAATTTTTGTATGCTGTTTAAAATAAAAATTTTGAAGCACTGGTATAGTTATGAAATTTAAGGACGTTCAGTAGAACTAGACAGTTATTTTCTGTAGATCCCACAATGTACCAATCAGACACTACAAATGATTTAACTTCATGGTTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTGTTTGTTTTGTTTCATTTTTTTTTTTTTTTTAGATTTATTTATTATATGTAAGTACACTATAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGTTTTGTTTCATTTTTAAGAAGTTGAAAAATCTTAGCTGGCTAAAAATATAATGCCCAGGGGTAAGATCTTGCTACCAAACTTGACAGCCCGAGATCAATCCCAGCACCTACCTGATGGATGGATGGATGGATGGATGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAACCTGCTCCTGCAGGCTGTCTTCTGACTTTTTTGCACAGAATAATAAATTAAAAAATATGGCCTGGTGAATACTATGAAATAAAAGAGCAAACAGTGCGCAGGAGTTCAGAACATTTACCTGGGAGCAGAAGTGAGCATGAAGGAGGGCTTACCACCACCTCACATAACCTTAACTACTACTACCTGTCGCATGACCTTAACTAGCTATTATCTGTGCAACAGAAAAGCTGTCAAGGGTCACTGGGCAGCTCTGATAAGAAGATTACTCTTAGCCATAAGAGAGCCATGATATCATGCATGAGATCAGCCAGTATCTTAGGGAGACATTTAGACCAACATTCCTACATTTTTCTAGTATTAAGACAGGGTCTCCACTGAAGCCAGGCTGGCCTGGAACTCACTACGTACCCCAAGCTGACCTTGTACTTGTAGTAATCATCTGTCCTTAGCTTCTGAGTTCTGGGATTAAAAGTGTGTGGTGGAACACCTGGCCTGACACGCATTCTTTACGAATATGAGGGAAAGTTCAAATTATTTAAATTTGGGGGGTTCTACTTTCTTTTCTTTTTTAAGGGTTTATTTGTTATGTATACAATGTTCTGTATGCATGTATGCCTGCACACCAGAAGAGGACACCAAATCCCATTACAGATGGCTGTGAGCCACATGTGGTTGCTGGGAATTTGAACTCAGAACCTTTGGAAGGGCAGTCGGTGCTCTTAAACTCTGAGCCATCTCTCCAGCCCTCTACTTTCTTTATTTCTAGAGCTTCTTAGCAATTAATGAGTGAGTGAATGAATACGACCGAGTTACCAAAAGGGAACACAATGCTTAATACTGTCAGAACTTACCAGGCTGCTGCTCCACTTCCAATGAACATACCAACTTTGTATGTTCCCTCGAAATAAAAGTTCAGACACTATAAGTCTGGCACCAGGAAAACACGTATGTAAATGCCAGCAGGTCAATCCCACAGCATTTTGCAAAAATGTATGAAGAAAGTAAAGCTTGTAAGAATGAAGGCATTCAGCACAGTGTGTGCTATAGCACAGATCAGAAGAAGAAACCTTAACAAGACAACTGAAGCACCAGGGGCTAACCTGCTGCTAGAATAAATAAAGACCATAGCTTCAGGCAACATTTGTTAAAAAGAATCAATATAATGCATTGCGTTTTAGGAGTGCGTATCTACAGTATACAGAGCAGAGGAGAGTGGGAGATAAAACAAGCTAATGCTTTGAGGAGTTGGCCTGATGTCACCCTTTCCTTTAGCTTTGTATGTATTTTAATTAGTTTCTTCAACTTGTATAGAGCATTATGCACACAGCAGATAAAATGTGGTTATCTGTAAAGAAACAAATGAAGGTAAGAATATTGATTTAAGAATTATTTAGTACTTATCTTTTACATTTCTCAAAAATCAATATTTAAATTACAG
Seq C2 exon
GACCATTCAAAGACTGTCAGCAAGCAAAGGAAGCTGGACACTCAGCCAGTGGAATTTACATGATTAAACCTGAAAACAGCAACGGTCTGATGCAGTTATGGTGTGAGAACAGTTTGGATCCTGGGGGTTGGACTGTTATTCAGAAAAGAACAGATGGCTCTGTCAATTTCTTCAGAAACTGGGAAAATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033544:ENSMUST00000027885:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(29.3=96.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types