GgaINT0045327 @ galGal4
Intron Retention
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17556503-17559919:+
Coord C1 exon
chr7:17556503-17556642
Coord A exon
chr7:17556643-17559812
Coord C2 exon
chr7:17559813-17559919
Length
3170 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATCTCATCTATTTTCTAAGGAT
3' ss Score
6.09
Exon sequences
Seq C1 exon
TCACATTCGTCCTACAATTCAGCCTGGTGTTCTGCCTTTGTTCATGATGTGTGTGATGATGCTTTACCCTATCCTTTTCCAGATGAGATCCTGGATGTCATTCTCCTTGTCTTTGTGCTCTCAACTATTCATCCTGACAG
Seq A exon
GTAAATGAGGACTAAAGGGCAAAGCAAATAGGTTAAATCTCTTTTATCCCTAGAGGTTTTCAAGAATATCAAAGGAAGATGATGAATCTTTAATTTATTATTTAGCAAGCTACAATATTTACAGGAAACTAAGGTATTTTAAATGACGTTTTCCAGAGAGAAAAGCTGGTCAGACTAATTCATTAGTGAACCTCCTGTCTCCATCAAATAAAAGGGGCATACTGTAACTAAATACATCCTATTAAAAGTGGCAAGAAAATTCAAGAAAATTGCATGTTCGGAAACAGACCACTAGACTTCCAGAAGGAAATTATTCTCAGTGATCAAAGACAAGCATTCACGATTTAACACCTTACAATATGCTGATGAAGGTTTACTTTGCTGATTTTCCACACACAAATGCATACATACAGGTCTTTGAAACTGAAATACATTCAGAATTTTGTAATGTTTGGATTTGAAGAAGTTAATCTAATTTTCATGCATAGTGTTATGTTGAGAGCTGTTAACCTTGTTATTAATAACTCTCAATGTCTAATGAACCGAATTTTATAACTGTTGAAGTTGGTTGATTTTTAAATTTTTTTTTTAATGAGAAAAGTTCAAAAGAGTGTGTGTGAATTAAACTACTTCACTCTTTCTTTGACCAGATCATTTAAAAGGAAATATACGCTCCCTGTGTGATAATGCATTTGCTACTTTCAGAATGCCTTTAAAATGGGCTTGGCAAGCAGGATAGTATTTGCTTGTTTCAAAACTGTTTCCCTGTCTAAGTTACTAATGATTAGCTTCACAGAAAAATCTTTCCCATATAGGACATTGCTCCTTCCTGTTTGTTCGGAGATGAGCACATGAGTCATGCAAAGCCTGGATCCAGATTTCAGAAACAATTCAAGCAGTAGATTTCAGATCTCTGTATCTGCAATGATGCTGCCAGGAAAAATTGGACAATAGAGGCTCATTCATTCAGTCATTTAGTCTGTAAAAGCAGTAATAAGATGTTCTCTCAGAATTTCAGTGTTTTCTTGCCCATTGTTTGAGTATGACTGTGTTTATTTTTTTCTCCCTATGTCTGTATCCAAAGGCTGATATAGATGTTTTTGCATACATATATACACATACTCAAATATATGTACCCATAAAAAATTCCATGTAATTATCTGTCTGATAAGATCCGCTTTCCAAAAACTTGTTAGACATTGCAATCTCAAAGAACTGAAGTGACTGCATGAAGATGAATATAATCCAGATCTTTTTTGTTTACATTTTTTATGGAAATGTTGAAAGTAGGAGAAGAAAAGGAAAACCAAGAGAATGATGCTGCAGAACTTAGGTTCTTTGGAGACCTGAAAAACATATGTGAGAGACACATTTGTGTTTACCACAACTGTTACTTAATGACTTCTCTATAGCTCATGTGTTTAGTTTTTGGTAATTGCTCCATTCATACCTCATAGGTAACACACTTCATTTCTGCTACGAGTCACCACTAAAAGTTGGTCAAAGAATTTGATGAAGTGGGAATTTGAAAGAATGTGAATTAATGTGATCCAGTCCTACTAGATCAGATCTAGCCCTATCAGATCTGATTTCTCCAAGTGCTTTCATTTTTTATGTATTTACACTTCTTCTGTGCGCACAGAACTTACACTTAAATAGACAGTCCGTTGTTCTGTGCAGTTACCTGTCATGAATGGTCATTTTTTCTTAGGTTGTGCTGCCTGTTCTGTCTTTTGCGGTATACGTGACTGCCTGTGTTGAGCACTAGCAAAGAGGAGAACTATTAAAGCGTTTGATTTCCTTTGAGGAAATATGTGCTCAAAAAGTGTATGGTTGTTTTATTTATTGAGATACGCTGCTGTTTTCTGCTGAACTACCTCCTAATCATATCTCTTAAAAATCAAGGCAGGATATCTGCACCGCAGTTGCATAAGGACCAAAATGTGCTAGTGGTTGCATTTTGAAGGGGTAGGCTACCTGAGAAACAGGCATAGTATAAGGATTTCCTATTAGTAGGCAGTAATAGTATGCTGATTTTGCATAGTTAAGGACGACTAGCTCTTCTTCATTTCTTTTAAGATGTGAATAGAAAAGCACCGTGCCTTTCTTATCCATTCATTTACCATTCTCTCTGACTCCATGTCTTCTTTGTGATCTGTCTGTATCCATGTGGAAAGAAGGGTTGAGTTAGTCACATGGACTTTTCTACCTTGCAGCCTGCAAAGTGAAAACTGCCTTTTTTGGTCTATCATAAATGTGGAAAACATGATTTCCACGTTCATGAAATGTTCTGAAAGAGTGAGGCAAACTCAAGGCATAATTCATTAGTAATAGATTTTGCTGAGTAATGCAAATATAAAGACGTGCCAATGTCTAGTGTCACTAGACAAGTGACACAAGTGTCACACAAAATGACACAAAAGTGACATTTGTGTCACTTGTCTAGTGAAAGGGCACTGTGTGTGGTACTTACTCCGATCGTATGCATGGCTAGCTGATGTGATCTTGGTAAGGAAGAGCTGATCTTAGATATGATCAAGACTCACAAATGTGTCAGCATTTTGGAGGATGCAGACTTTCTCCTCTAATTTGCAAAATCTTTGGATAGAGTCCTACTGAATTCCTCTCCTGAGCTACTACTCTTGTTTTCTTTACATTCTCTGGCATTAGATATTAAGATACTGTGTGCATGATCAATACCTCAATAGAGAAATCAATTCTTATCAGCCTTCCATGCCCTTGCTTTTACTGTGCACTGTAAAGAGGCTTAGTCTAGTTCACCAATGCCCATAGCTAACTGTTCATTGTCATATGTATATGCCTGACTCATATGACATATATTTGGAAACTGTGTTTTAATCTATACTTGAGATTCTATTGAAGCAAAGGCCAGGGATTTCTTTTTTTTTTTTGAGTTTGCATTCTCTGATAATATTTTCATATAAATGTTTTTTTTCTTGGTAGTTGGTGTTTTTGTCTGTTTGTTTTTGTTTTTTTCTGATTGTTTTTGTAAAGAGTTCTTCCTGTTTGCTAATGTTTGGCATTTTTGTAGTAAATATATAGATACTCCTCAGTATAGTGTCAGAAATCTGTGTATTTTCCAAGTATCTAGGAAAAAAAACCACAACAGTGACATTGTCAGATTTCTCTGATCTCATCTATTTTCTAAG
Seq C2 exon
GATGCAACAGGTTGTAAATAGATTGGTTAAACTACTGAAACCTGGAGGGATACTGTTATTTCGAGACTATGGAAGATACGATACAGCTCAACTTCGTTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564:ENSGALT00000015575:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.5=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]