DreINT0095421 @ danRer10
Intron Retention
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3557829-3558530:+
Coord C1 exon
chr9:3557829-3557968
Coord A exon
chr9:3557969-3558423
Coord C2 exon
chr9:3558424-3558530
Length
455 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATA
5' ss Score
6.25
3' ss Seq
CATCTGGTTTGCTTTTTCAGAGC
3' ss Score
9.49
Exon sequences
Seq C1 exon
AAGCATCCAGACTATGACCCTGCAGTGTGTCACGCATTCGTACGGGACATTTGTGACGCAACGTCCCCGTTTCCCTTCCCTCCTGAGAGTTTGGACATTATTCTGGTGGTCTTTGTGCTCTCTGCCATCCACCCAGCACG
Seq A exon
GTAATAAAGGTCAAGCTGACACACAGTCACATTTTCACACTGGCACAGCACGCATCTGACATTATAGGCGGTTTGTTTGACCAGCGTCCGTCCACAGCATCCATTACTGATGTTCTCAATAATTTTAAGTTTTTTTTTTATTGTTTTATGTATCAGAAATTATTGCTACTCCTTCCAGCTACTTATTTAAAAGGAGCTAAATCAGCACAATTCTTGTGTTTTTTTGGACAACTTAATTGTTTTGTAACAATTCACTTATATTTGATAAACATTAAATTACCTTAAGTGATTTGTGTTGGGACAACATAAAGGTATTGTATTGGTGTAACTACCTATACAGTATATAGTTCTCAGCATGCCTGGGATTGGATTGACAGAGGGAAATGTTGACAATAAAAGAAATCTTAGGTGTGTAGTCTTAAACCCTGTGTAACTCATCTGGTTTGCTTTTTCAG
Seq C2 exon
AGCTCAGGCTGTGGTGAGGGGTTTAGCGGGACTCCTGAAGCAGGGAGGAATGGTGCTGTTCAGAGACTACGGCAGATACGATCTGTCACAGCTCAGATTTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359:ENSDART00000008606:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.7=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCAGACTATGACCCTGC
R:
CTTTCTTAAATCTGAGCTGTGACAGA
Band lengths:
246-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]