RnoINT0005730 @ rn6
Intron Retention
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57260155-57267346:-
Coord C1 exon
chr3:57267207-57267346
Coord A exon
chr3:57260262-57267206
Coord C2 exon
chr3:57260155-57260261
Length
6945 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATCTTGCTTTGTTTTCAAAGGAT
3' ss Score
7.56
Exon sequences
Seq C1 exon
TCACATGAGGCCTACAGCGAGGCCCACTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTGGCCTACCCTTTTCCAGACGGGACCCTGGACGTCATTCTCCTTGTCTTTGTGCTCTCTTCTATTCACCCTGACAG
Seq A exon
GTAAATGAAGACGAAAGGGCAGCACGAACCTTTAAGCTCCTTTATCAGTCCTGGTTTTTAGAACTATCAAAGCAAAAATGACAATCCCTGAATTTATTATTTAGCGAGCTCCGTTATGTTTAACATGCAGCCTCTTAAATGCAGTTTTCTCCTTTCTTCACACTTTAAGAAAGAAACTGGTCAAATGCTTCATTAGCAAGCTTTCTGTCACTGTCAGGATGAAGCAAGCACACTGTAGCAAGACACATACCTATTAAAAGTGACAGCTTCAAAGAAATTACAGATGCAGAACAGCCTAATAGACTCCCAGGAGGGAGATTGTACTTAGTGATCAGAAACAAACATCTTTGATTTAGCATCTTCTTGAGTGTTTGGGGGGAGATGGGCTGCAGTCTGGTTACTCGGGTCCAGTGAGAGGCTTGTGTTTCTAAGAAGCCCGCACAGGGATCGTGGCCGTAGCGATTTCACAGACTGCCATTGGACCTTTGGGATCTAAGGTGGGGAAAGAGCATGTGTGAGTGTGTGTGCGTGTGTGTGTGAGCCTTTGTGTTTATGTATGTGTGAGTGTGTGTGTATGAGTATGTGTGTGTGTCTTTGTATATGTTTATGTATGTGTGTATGTGTGTGTAAGTATGTGTGTGAGTGTATATAACTGAGTGTGTATGTGTGCATGTGTGAGCCTTTGTGTATGTGTGTGTGTATGAGTGAGTGAGTGAGAGTATGTGTGTGTGAGTCTTTGTATGTGTTTATTGTGTGTGTGTGAATGTGTGTGTATGTGTGTATGAGTAAGTATGTGTGTGAGTGTGTGTATGAGTGAGTATGTGTGTGCATGTGTGAGCCTTTGTGTGTGTTTATGTATGTGTGCGTGAATGTGTGTGTGTATGTGTGTATGAGTAAGTATGTGTGTGAGTGTGTGTGTAAGTGAGTATGTGTGTGCATGTGTGAGCCTTTATGTGTGTTTATGTATGTGTGCGCATGTGTGTGTGTGTGTGTGTGTATGAGTGTGTGTACATGCTCTTCTACTGAGTGTCTCTACCCTCCAAAGTATGACTTACATTTTTATGTTTGCATGATACTGGTTTTTATTTTTATTTTTTTGAGAAAGAGTCTCACGGTGTAGCCTATGCTGACTTTAAACTCTTTATCCAGCTCTGGCTGACCTCAAACTCTGAGTGACCCTCCTTGCCTTAACCTCCCCACTGCTGAAATTGCAGGCATGTGCCACCATGCCCACCTGGCAGGACTTGTGATTTTATAGATTTCACAGCCCCAGGAAGAGTGTACCGAGCTGCATAAGATTCCTTTTGCTTGGTGTGTGGCCCCTTCCCAGAGAACGTGAGTCCTGTGTGTTAAGATGCTAAGGCACTTGCTGGCTTCTTAGTTCCCATCCAAAGTTGAGCACTTTTCTCATAAGGAGGTAAAATTTGATTCCCAAATTAATCCAAAAAAGTTATATTTATACCTCATGCATAGATTAGGTTCCGCCAAACCACTCTCCCCTCTGTTTCTACAGTGTATTTCTTTGCTGATGATATGTTCATCTGTTGGCGCTGCTGCCGAAGAGTCAAGATGTCACCTCTGTGCTCCGCTTCCTTCTGTGACTGGTTAAAAGACTGGCCTAGGTAGTTAAGAGCTAGCGTCCCTATTTGGTACTTAAAGTGGAAAATTCCTAGATTCTATGTAAAATTGCCAAAAGACTAATTGAGATTGGTTCAAATACTCTATTTTATCTTAATTTGAACTGAATGTTAATAAGGGGGTGCAAATATCTTGGGGTGCCTGCTCTTCTTATGCAGTACTCACTGTTTATTACAAAATAAACTCAAATGCATCATGTCAGTACGACTTTTGTACCTATGTGTGGAAATGAACTAAAAGCCAGGCGGATGAGCTGGGAGTGGAGTTGTGGCCCCACTTGTGGCCCCAGCTACTCGAGTGGTTACGGCTAAAGGATCAGTCAGCCGCTGGTGTTTGAAACCAACCTGGGCAGCACAGTGAAACCCCACCTTAAGACATTTTAACTAAATAAAAGTGACGTGAATGAATAGAAGAGAGACAAGAAACATAAAGAAATGGTTTAGCAGTGTCTTTAGGAGCATTTAGGACTATAATTGTGGATGTGCATCTAAGAACATTCTAGAAAAGTAGCTCATTATCATCAGAAAAAAGAAATGGCAGTAATTCAGCTAGGTCCTGAGTCTGAGGGCAGCAGCTTAAGTGGAAGTGTTTCGTAGATTACAGGAGACCGTTAACTGTCTTTCTAATCACTGGCATAAAAGAAGATACAAGATACATACTATGGGCAGTCCGCAAATAGTGGGGAGTTTTTATTCTTTGTTCTGTTTTATCTTTTGTCCCTGCCTTGTACTCAGGGGCAGGTGAGGACAGTAATCGCTGAAGTACACAAAATAAAGAAAGGTCTGGGTATCCCAGCGCTTAGCTGAGGCAGGTGGATCTCTGTGAGTTCCAGGCCTGTTGTGGTAAATATTACTTGGGGTTCCACCCCACCTTAGATAATGTAGTTCCCAAATAAAAGACACAAAACCTTTTTATTTATAACAAGCCTTAAAGAACTAGAGCTGGGCAGATATCAACCCTCTGTGCTATTCTGTCTACTTCCCTGTCAGTAACCCCAAGATATGCCAGTAACCCAAGAATACTTGCTGAGTTCCTCCTGGGCCAGTTCTACTCCAGCTGTCCAGCCCTCACAGCCAAGCACTTACATCCACTCCACCTACCCCATAGCACCTTCCTCCTCTCCTGCCTCTCTCCTTTCTCCCTCCTCATGTCCCCTGCCTCAGACCCCAAGCCTGGGAACTGAAACCCCATCTGCCCTCATCTGTCTAGCTACAGACTTTTCCCTGTCAGTAACCCCAAGATATGCCAGTAACCCAAGAATACTTGCTGAGTTCCTCCTGGGCCAGTTCTACTCCAGCTGTCCAGCCCTCACAGCCAAGCACTTACATCCACTCCACCTACCCCATAGCACCTTCCTCCTCTCCTGCCTCTCTCCTTTCTCCCTCCTCATGTCCCCTGCCTCAGACCCCAAGCCTGGGAACTGAAACCCCATCTGCCCTCATCTGTCTAGCTACAGACTTTAGGCATCTTTATTAACCAATCAAGGATAACTTGGGGGACAACATCTATACAACAAAAGCTGGTATATGTGAGAATCTGCTCATCTAGAGCAACCAGATTTGGGGTACAGAATTTAGGATTTGAATACAAGCAGCACCAAATCAACCCACTACACAGGCCAGCCAAGAATAATGAGACCTTGTCTCAAAAGAAAAGAAAGGAAGAAGGAAGGGAAAGGAGAGAGGGAGACAGAGGTGGAGGAGAAGGGGGAGGGGGGAGGGAAGGGAAGGGAAGGGAAGAGGGACCATGATAGTTTGTCTCAGTTGTAAACTTGACTGAGTCTAGAATCGCCTGGGAGATGGTCCCGTGGAAGTTATCTTGAGTACATCAGTTGGCATGGGGAAGGCCAGTCTTCCTGTGGGTGCGGCCACGCCCTGGGCAAGGGATCCTGAACTATACAAGATGGAGAAAGGGACCTGAACACTAGCATGCATCCGTAGTTCTCTGCTTTCTGACTGGATGAAGGGTGACCAGATGCTTCAGGCTCCTGACTCCTTGACTTCCCTGTCATGGTAGTGTGTAACCTGAACTGTGAGCCAAAATAAGTGTCCTTTCCTGAGTTACTCCTGTCAAAGCTTGTTATCACAGCAGCAGGGAAAGCAACTGAGACAGGGGCTTCGTCCCACTCTTGTCTTCCCGACTTCATTCCCAGCCTGGTCCCACCGTGATTCCCAGGAGTGCATATGATTGACAGGAGAAGCGGCTCCCACTCCTGTCCTACGCACACTCCAATGTAGGCACGGATTCACACAGTGGCTGCATGGTGACATGCTTGACTTGATTTTTCTCACCTTTATTTTCATCCCTTATTTTACTAATAATTCAAAGATGTCTGCTCTGTACATAATAAACTTTACCTTGAAATTGTTACTTTTTTAAGGCTTACTTTATATTTTTTTATTTATTGCTTTTGAAGTTTTGTCCTGCATATAATGTCGTATCGGCGTCCCCTAGACTGCAGTTTCAGGTAATTGTGAGCTTGCCATGTAGGTGCTGGGAATTTGAACCCAGGTCTTCGGAAGGACAGCCAAGGCTCTTTACCACATTGAGCAATCTCTCCAGGCCCCCAGATTTTTTTTCCATGTTAAGAGACCACAGTATGACAGAGCACAACAATGAAAATGGCCTGAAATGAACAAAGATAGCACCTTCCTTCTGTATTATGGTGCTTCTTCTTCCTTCTTGTGCTGTGAATTGAAGCTCAGGGCCTATCCGCACTAGGCCAGCATCCTCTGCACACACAGGGCCTTGGTAGCCACAACACCACAGGTTTATCTCTTAGCTTTAAGAACCGCGTCACCTAGGCAGGCCATCTCTTTCATGTTTGCTCTTCAGAATTAATTTCATAGCAGGCTTTTATTTTCTCGCTACTACTTTCTTTGTGATCATGACGAACCTGGATTTCCGACCCTCTATTCTAATAAGACGTAGTTTTGGGGTCGGGGACTTTAGCTCAGTTGGTAGAGCGCTTACCTAAGGTAAGCCGCAGGCCTGGGTTCGGTCCCAGCCCGATAAAAAGAACCAAAAAAAAAATAACGTAGTTTTTTTAGGATTTTTAAATTGCATGTGTGATATGTGTGTGTATTATATGTATTTACATGCAGGTGATTGTGTGTACATGTATGTGTACATGTGAGTGAGTGTTGTATATGTATGTGTACATGTGTATGAATGTGTGATTGTGTGTGTGTGTGTTCCTGTGTGTCTCACAGCATGTATGTGGTGCCCAGATGACTACTGTGTGGTGTTGGTTCTCTCCCTTCATCCTCACGTGGCTCCCTTGTCAGTTTCCCGGCTTTCATGACCAGTGCTTCTTACCTGCTGGGCCAGCTTGGCAGCCATGAATGTCGCTTTAGAAAGGAATATATCAATTATCTGAGCTAATCTCATCTTTTCAAAATAAGATCACCTCAGAAACTTGAAGTGGCTTAGGTAAAGCAGACGCCAAGCTGGGTGTGGTAGCTTAAGTATGCAACATTAGCACTCAGGAGGCTGAGGCAGGGTGACTGCTGCCAGTTCAAGGCCAGCCTGGACTATGTAATGAGCTACAGACCACCCCGGGCTGCAGTGTGAAACCCTGTCTTAAAAGCCAAAACCAAACAAAAGTAAAAGAGACAACAAAAGCTTGTCCTGTAAGCTACCTTTTCCCTTCCCTCCCTCAGTAGTCGGTAGGAAAAGTTCCGGACGCTGGTGGCCATTCCCTATTGGCCCCCTGAGTCCTCTCCAGTGGAGCTCTGTGGGGAGCTAAAGCCCATCACTCAGCAAAGCCCAGAGTCTTCTCAGTCCCTGACCTGTAAAACATAGGCCATGAACACAGAACCCGAAATGCTAAGCCACGGTCTATTTTAAGAGGTCGTACTTGATTGCATGCTGCATAGCAGAGGGGTAATTAGCAAGGAGGAAAGAGGCAGGAGCTGCGCAGTGTTGAGCTGGGAATGGGGCTATGACTACAGTCGGAGCAGGCCAGGAGTAGGGAGAAAAGAATCCTTTCTCTTGACAGGAAACCATGCATACAAAGGCACAGGACACAGAGCCCAGGCTGCTGCAGTATTCGATGGGAAGCGATGATTGGTTAGAAAGCAATAGACATCATCAGAAGGATTCAAGCTAAGAACCTTATAAGATTCAAACCTTTGCCTGCTGGATTACTTGCTTTGACAGTGATGTGATTAGACGAGACCATTGTCTGACGTCAGATAACTCATTGGTATCATCCATGAAGAATTGCCAAGAAGGATGATGTAGTATATTATTAGAAAGTGATTCTCTTTCTGGGCTTGGGGCTATAATTGTTTGTCCCAAGGCCCTGCCAATGGGAGACAGAGAAAACACCAAAGGGGAGAGATAAGAAGACAAAAAAGATTGCTGAGCACATGGATAGGATAGAAAGGAAGGAAAATTCTCTCTGAGCGGATTGGGAGACCTTTCATCTTACTGAGGAAGTCAGGAGCGCAAGGGCTGGCTCAGCGGGTGAAGCACTCGGACCCGAAGACCCCAGTTCAGATTCCCAGAACCCAGGTCAAAATGCCAAGCAGGCACGGATACTGCCTGTAATCCTGGCCTTCCCGGGGCAGACAGGATCCAGGAGCAAGGTAACCAGCTAGACTAGCCAGAATTTGGGTTCTAGGAGAGACCCTGCCTGATGTCAGGTTTGGGCTTACATATACATGTGGACATGCATGCACACTCATGGGAAATGGAAGGAAGGAGGGAGGGAGGGGAGGAGGGAGGAGAGGGAGGTGGAGGGAGGAGTTGAAGGAAAGGCAGGCAGGCACGAAAATAGTAACATGGAAGAAAGATGATGAGTTTAGGTCATCATAACAAATTTGGGTGCAGTTACACATATGTTTTATTTATTACTAGAAATAGAAAAGCCCCTTTACCTTTGGTCCCCTACCTCATTTAATGTTCAGAAACATAAGCAAGTAATGGTGAGTTGTTCTGGTTTGGTTGGAGACGGGGTTGCCAGAGTAGACCTTGGGCTGGTCTTGAACCCACCGATCTATCGTTGCAAGCCAGAGTCTAGATCACACTATGACCACTAGTAAGGTTCAGGTCTTAGTGTATCAGCTTTGACATGTAGACCCAGCTATGAGTCACATGCCGAGTTCTTAAAGACTTAAGACTTCTGAATTTGGTTCTTTCGATACAAAATGCTTTTGTGTTTTTGTTTTTTGGGTTTTTTTTCTCTCTCTCTTACATGTATGGTTGCTTTGGCTTGTTGATATCTTCTCATCTTGTCTCTGGGAAGGTTGACCCTAGCATATAAAACATTCCCACATAGGTTATCTTGCTTTGTTTTCAAAG
Seq C2 exon
GATGCAAGCTGTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGACAATGCTCAGCTTCGCTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382:ENSRNOT00000075860:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=FE(51.7=100)
A:
NA
C2:
PF082417=Methyltransf_11=PD(22.5=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]