MmuINT0098071 @ mm10
Intron Retention
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70967050-70973392:-
Coord C1 exon
chr2:70973253-70973392
Coord A exon
chr2:70967157-70973252
Coord C2 exon
chr2:70967050-70967156
Length
6096 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATCTTACTTTGTTTTCAAAGGAT
3' ss Score
7.7
Exon sequences
Seq C1 exon
TCCCACGAGTCCTACAGCGAGGCCCAGTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTAGCCTACCCTTTCCCAGATGGGATCCTGGATGTCGTTCTCCTTGTCTTTGTGCTCTCATCTATCCACCCTGACAG
Seq A exon
GTAAATGAAGACGAAAGGGCAAAGCTAACGTTTCAGCTCCTTTATCAGTCCTGGTTTTTAGAACTATCAAAGCAAAAATGACAATCCCTGAATTTATTACTTAGCGCACTCCGTTATGTTTAACATGCAGCCTCTTAAATGCAGTTTTCTCCTTTCTTCACACTCTAAGAAAGAAACTGGTCAAATGCTTCATTAGCGAGCTTTCTGTCACTGTCAGGATGAAGTGAGCACATCCTGGCAAGACACGTACCTATTAAAAGTGACAGCTTTTCAAGGAAATTACAGATGCAGAACAGCCTAATAGACTCCCGGGAGGGAGATTGTACTTAGCGATCAGAAACAAACATCTTTGATTTAGCATCTCCTTGAGTGTTTGGGGAGAGATGGGCTGCAGTCTGTGTGGCTCACCCGAGTCCAGTGAGAGGCTTGTGTTTCAGAGAAGTCTGCACAGGAATCATGGCCATAGTGATTTCACAGATTGTCATTGGAACTTTAGGATCTCAGGTGGGTCGAGAGATTTCTGTGTCCCCTTCTTATTAATATTCAATTCAAATTATTATTTACTCTTAATGGTTTATTTGTATGGGTGCGTGTGAGTGTGTGCATGTGTGTGTGTGTGCATGTGTGTGTGTGCATGTGTGTGTGCATGTGTGTGTGTACATGTGTGTGCGTGCGTGTCCTGCTGGGCATTAACCTTAAGCTCTTATGCATGTTGGTCACATGCTCTTCTACTGAGTGTCCCTACCCTCCAAAGTATGACTTACATTTTTATGCTTACATGATACTGGTTTTTATTTTTGATTCTTTGAGAGTCTCACCGTGTAGCCTATGCTGACTTTGAAGTCTTTATCTAGCTCAGGTGGACCTCAAACCCCGAGTGACCCTCCTTGCCTTAACCTCCCCACTGTTGAAATCACAGGCAGGTACCACCATGCCTACCCAACAGAACTTGTGATTTTTATAAGATGTCACAGCCCCCAGGAAGAGGGTACAGACCTGCATAAGATCCCTGTTGCTTGATAGTGTGATCCCTTCCCAGAGAAAGGTGAGCCCTACGTGTTACGTTGCTAAGACATTTGCTGACTTTTTAGTTCCCATTCAAAGCTGAGAACTTTTCTACTTAAGGAGGTAAAATTTGATTCCCAAAATAATCCAAAAAAAAAAAGTTATATTTATACCTCATGCATAGATTAGGTTCCATCAAACCACTCTCCCCTCTGTTTCCACAATGTATTTCTTTTCTGATAATATGTTCTTCCATTGGCACTGCTGCAGAATAGTCAAAATGTCACCTCTGTATTTTGCTTCCTTTTGTGAATGGTTAAAAGATGAGAGTATAGTAAAGAGCAAGCATTCCTATTTGGTACGCAAGGCAAAAAAATGCATCGATTCTAAGTAAGATTACAAAAAGACTGATTGAGATTGGTTCAAAGAATGTATTTTATCATAATTTGAATTGAATGTTAATAAAAAGGGGACACAGATATCTTAGGATTCTTGCCCTTGTTATGCAGTATTCATTCTGTGTATTATAAAATAAATTCAAATGTATCACATCAGTGCAATTTTTTTACGTATATATGAAATGAACTAACAATCAGGTGAATGAGCTGGGAGTGGTGTTGCACAATTGTGGTCCCAGCTACTTGAGTGGTTAAGGCTAAAGGATCAGTCAACGTCATTTAACTGAATAAAAATGAGGTGAAATGAATAGAGAGACAATAAATGTAAATAAATGGCTTAGCAGTGTCTTTAGGATCACTTAGGACCATAATTATAAATGTGCATCCAAGAACATTCTAGAAAAGTAGCTGATTATCATCAGAAACAAAGCAATGGCAGTAATTCTGCTAGACCCTGAGTCTGAGGGTGGCAGCTTAGGTGAAAGTATTTCATAGGCGATTACAGGAGACCCTTAACTGTGTTTCTAATCATTGACATAAAAGAAAATATAAGATACATGCTGTGGGCAGTCAGCAAATAGTGGGGAATTTTTATTCTTTGTTTGTTCCGTTTTTATCCTCTGTCCCTTCCTCTTACTCTATGCAGGGGCATAAGGACAGCAATCAGCTGAAGACACAAAATAAAGAAAGGGCTGAACATCCTAGCACTTGGATGAGACAGGTGGCTCTCTGTGAGTTTCAGGCCTGTTGTGGTAAATATCATTTGGGGTTTCTACCCCACCTTAGATAATTTAGTTCCCAAATAAAAGACGCAAAACCTTTATATTTGTAATAAGCCTTAAAGCATTAGAGCTGGCCAGATATCAACCCTCTGCTGGTCTGTCTACTTCCTGGTCAATAACCCTGAGATATTATCACTTGCCCAGCTGGCCAGCCTTCATGGCCAAACACTTACAGTCCACTCCACCTACCCCATAGTGCCTTCTTCTCTCCTGCCTCTCTCTCCTTTCTCCCTCCTCATGGTCCCTGGCTCAGACCCCAAGCCTGGGAACTGCAGCCCCGCCTAAAGGCATCTTTACTAACCAATCAAGGACAACTTGGGGTGAGGGGCAACAATCATACAACAAAAGCTGATATGTGTGAGGATCTGCTCATCTGGAACAGCCAGATTTGGGGGTACAAGGGATCCTGAACTATACAAGATGGAGAAGGGGACCTGAACGCTAGCATGCGTTCATGGTCCTCTGCTTCCTGACTGGAAGGAGTGTGACCTGCTGCTGCAGCTCCTGACCCCTTGGCTTCCCTGCTGTGTAGTCTGTAACTGAACTGTAAGCCAAAGTAAACGTTCTCTCTCGAGTTGCTCCTGTCGAAGTATGTTATCACAGCAACAGGAAAAGCAACTAAGACAGGGCCTTTTCCCATTCCTGTCTTACCGACTTCATTCCCAGCCTGGTCCCACCATGCTTCCCAGGAGCCCGAGTGCAGATAAGTGACAGGAGAAGCAGCCCCACTCCTGTCCTACCCATACACTCTGATGTTAGGCCAGGATTAACACAGTGGCTGCATAGTGATGTGCTGGATTTTTTATTTTTCTAAATTTTTTATTTCATCCTTATTTTACTAATAATTCCAGAGATTTTGCTCTATACATAATAAGTTTATCTTGAAATTGTTCTTTTTTAAGGTTTAGATTTTTAAATTTTATTTTTATTTTATATGCATTGATGTTTTGCCTGCATATATATGTCTGTGTGAGAGTTTTGGGTCCCCTGGACTGGAGTGTCAAGCAGGGGTGAGCTGCCTGCCATGTGGGTGCTGGGAATGAGCCCAGGTCCTCTGGAAGAGCAGCCAGGGCTCTTACACGTTGAGCCATCTCTCCAGACCCCAGTTTTGTTTTGTTTTGTTTTGTTTTTCCATTGATGTAAGCACTACATGAAATGAACAAAGAATAACACTTCCCTTCGTGTGTTTATGCTTCTTTCCTTTTTTCTTGTGCTATGAATGAAACTCAGGGCTTCACACACGCTGGGCCAGCATCCACGCATGGAGCTTGGTACTGCAAGTACCCCGGCTTGTAGTTCAGCTTTTAAAAACTTTCCCCTAAGCATGCCATTGCTTTCTGTCATGTTTCTTATCTGTTTAGATTTCTTTTCCTAGCAGCTTTTATCTCCTCCCTAGCTGCTTTCTCTGTGACATGGCAGAAGCTGGATTTTATCCCACTAGTCCACTAAATGTAGTTTTTTAGGATTTTTAAATTGTATGTGTGATATGTGTGTGCGTTATATGTGTGTGAATGTGTATATGTGTGTATGTGCATCTGTGACTATGTGTGCATGTGTGTGAATGTGTGTATGTAGATATACATGCATAACTGCGTGTGTGTGTGTGTGTGTGTTATGTGTGACTGTGTGTGTGATATGTGTGTGCATGTGTGGATGTGCATGCGTGACTGCGTGTATGTATGTTATGTATAACTGTGTGTATGACATGTGTGTTATGTGTGTGTGCATGTGTGTGAATGTGTGTGTGTGGATATACATGCAAAACTTGTGTGTGTATTATATATGTGAGACTGTGTGTGTGTGCATGTGTGACTGACTATGTGCGTGTATGTGTATGTATGTGCGGCTGTGTGTCCCCCATCATGTATGTGGCAGTCAGATGACTACCTTGTGGCGTTGGTTCTCGCCCTTCGTCCTCACATGGGTCCCTCTCAAGTTGCCAGGCTTTCCTGCCAAGTGTTTTCTACCTGCTGAGCCATCGTGGCAGCCATAAATACTGTTTTAATTGAAAGGAATATATAAATTATCTGCGTTAATCTCTTCACCTTTTCAAAATAAGATCACCTCAGCAACTTTAAGTGGCTCAGATAAAGCAGGCGCAGGGCTGGTGTGGTGGCTTATGTCTGTAACACTAGCGCTCAGGAGGCTGATGCAGGATGACTGCTGCGAGTTCAAGGCCAGCCTGGGCTACATAATGAGCTTCAGACCACTCTGGGCTGCAGTGTGAAACCCCATCTTAAAAGCCAAAATCAAACAAAAGAAAAAGAGACAACAAAGACTTGCCCTATAGGCTGCCTTTCCCTTCCCTCCCACAGTAGTCAGATGCTGGTGGCCGTGTCCCCTGAATCCGCTCCAGTGGAGCTCTGTGGGGAGCTAAAGCCTGTCACTCAACAAAGACCTGAATCTTTTTAGTCCCTGGCCCATAAAACATCAGCCATGAGCACAGAACCCAAAATACTAAGTCACAATCTATTTTAAGAGGTCATATTTGATTGCATGCTACATAAGCAGAAAGGGTGATTAGAAAGAAGGAAGCAAGAGCCTCTCGGTGTTGAGCTGCAAATGGGGATGTGACTGCAGTCGAAACAGGCCAAGAATAAGGGGAAAAAGTATTTTTCTTGAGAGGAACCATGAATACAGAGGCAGAGGACACAGAGCCCAGCATGCTATAGTGTTTGTTTGGAAGAGATGCTTTTGGTTAGAAAGCAGTAGAAACCTCATTGGAAGGATTCACACTAAAAACCCTATAAGAACTAAACCTTTGCCCTCTGGATTAAAATCTTGATATTGTTTTGACAACGATGTGATTTAACCAGACCATTGTTTGAAGTCAGATAACTCATTGGTAATATCCATGAAGAATTACCAAGAAGGGTAATAAGGTATATTATTAGAAAGTGATTCTGTTCTGTGCTTGGGGAGGGAAGTGTTTGTCCCAAGGACCTGCCAATGGGAGACAGAGAGATCAGCAAAGGGGAGAAGTAAGAAGACAGAAAGAGATTGGTGAGCACACGGACAGGACAGAAAGAAAGGGAGTGGACCAGGGTACCTTTCATCTTACTAAGGAAGTCAGCGGTGGAAGGGGTGGTTCAGCGAGTAAAGCACTTACTGTGCACCCCTGAGGACCCTGGGTCAGATCCCTAGAACCCAGGTTAAAAAAGCCAAGCAGGCATGGATGCTGCCTGTACTCCTGGCCTTCAGGGGGCAGAGACAGGATCCAGGAGCAAGGTGGCTAGCTAGACTAGCCAGAATCTGGGTTCTAGGAGAGACCCTGCCTGATGTCAAGTTTGGGCTACATATACATGTGGGCATGCATGCACACTCGTGGAAAAATAAAAGGAAGGGAGGGAGGGAGGAAGGGAGGGCGGGGCAGAGAATGAAGAAAGGGGAAGAGAAGGAAGGCAGGAGACGAGGTAACATGGAAGAAAGATGATCTGTTTAGCTATATAAATTTGTGGTGGTTCTAACATATTGTTCTATTTTACAGAAAAAGATAAAGTTCCTTTACCTTTGTCCCCTGCCTTATTCAATGGCAGAAACATAAGCAGATGGGTGGGTGAGTTGTCTGGTTGGTTGGAGACAGGGTTGCACTATAGCCTTGGCTGGTCTCAAACCCATGATCCTCCTGTTATAGCCCCACAGTATGCACCATTGTACCAGGTTTGTGGTTTGTGGTTCAGCTCTGACATGAGACATCAAGTTCTGACGTTCCCAGCTGAGTTCAGTTCATGAAACACTAAGACTTCTGAATGTGGTTCCTTCAATACAAAATGCTTTTGTGCTTTTGTTTTTTTTTTCTCTTACATGTATGGTTCCTTTGGCTTGTTGATATCTACTTACCTTGTCTCTGAGAAGGTTGACCCTAGCATATAAAACATCTCTACATAGGTTATCTTACTTTGTTTTCAAAG
Seq C2 exon
GATGCAAGCTGTTGCCCACCGACTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGATAATGCTCAGCTTCGTTTTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975:ENSMUST00000112186:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=PU(67.7=95.7)
A:
NA
C2:
PF082417=Methyltransf_11=PD(30.8=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types