GgaINT0045798 @ galGal4
Intron Retention
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17827732-17828723:-
Coord C1 exon
chr7:17828561-17828723
Coord A exon
chr7:17827813-17828560
Coord C2 exon
chr7:17827732-17827812
Length
748 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ACATGGTTTTGTATTTTTAGCTT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTTTTTCTAAAGTATTACCATATAGAGCAGTTAAATTTGTTCCTGCGAGAAGTTATAGGGAGGGTGGTGATCATGCAGGCTTATATCAAGGGATGGCTTGGAGCAAGGAGGTACAAGAAAGTCAAAGAAAAAAGAGGAAATAGTGCTGTTACCATACAGTCAG
Seq A exon
GTAAATATTCGCATTTCCTATTTAACTGAGTAACTTGGCATTTCAAGATGTTAAATTATGTGTACAATATTTATTCATTCATAATAGTTTATATGAAATCAAAATAAGTGGAGGTACTTTTCTCTACAGCTAATTGATGCAAATATTACTGATTTACTTCTAGGGTGTTATCTTAGCTTTCAGTAATGTCATTATTTAAAATATTTTAGTATTCTGGATGTGATGCCTGTACATAAATGGAAAAAATTCTTAGGTGCGTCTACACTATCTTGCAGCACATAAATAAAATGAGGTGTCTTGGTTCTCCTCCCTCTCTTCCCCCTCTTTCTTCTCACGTGCACCATACTTACAGATAACATAAGTTATGGGGTAGGTCCAAAAGGCTGATTGCCAGTAATCTAGCAGGCTTTTTTGAATTTGGGGAGCTATATGAGAAGGGGAGTTCTTGTGCTGACTGACGATGCACAATTATCATGCACCTTTGCCTTTTGGATTAGGACATCAGCGAGCACATGGTGACAATTAAAATTTGGACGAGTAAAGCAGTGTTTGAAGTTGCAGGGATGAGCGTACTGCAGTCATGAACTCAGAGTTCAACATGTGGGTGGGTGAGGAGGAGGTACTGGGGGTGGGGGCTGGAGTGGTTGTGGCAGGAGAGATGAAAGTTTCAGCACATCTCTAACTCTGTAGACTCTGTAGCACTTCCTTAAATAAATGTAATTTCCAGCACATGGTTTTGTATTTTTAG
Seq C2 exon
CTTGGAGAGGATATGAAGCTCGCAGGAAGTACAAGGAAATAAGGAACAGAAGAAATAATGCTGCTATACATATTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602:ENSGALT00000015648:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=5.5),PF0061222=IQ=PU(42.9=16.4)
A:
NA
C2:
PF0061222=IQ=PD(52.4=39.3),PF0061222=IQ=PU(42.9=32.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGCAGTTAAATTTGTTCCTGCG
R:
CTGCTTGAATATGTATAGCAGCAT
Band lengths:
222-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]