MmuINT0104376 @ mm9
Intron Retention
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70152333-70153487:+
Coord C1 exon
chr2:70152333-70152495
Coord A exon
chr2:70152496-70153406
Coord C2 exon
chr2:70153407-70153487
Length
911 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACATGGTTTTCTATTTTTAGCCT
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTTTTCCTCAAATATTACCATGTCGAGCAATTAAATTTGCTTCTGCGAGAAGTCATGGGACGAGTGGTCATGCTGCAGGCATATACCAAGGGCTGGCTCGGAGCAAGGAGATACAAGAGAGCCAAAGAGAAGAGAGAGAAGGGCGCCATCACCATCCAGTCAG
Seq A exon
GTAAGTGCACCGGTTCTGGCCAGTGACACCTCTCACCATTTAATTGACTGCTGGGGTGACTCATCTTGGGCCTCCCCCTTCGCTCTCTCCCTTCCTCCCCTTACTTCATCAAACGTTTGTCAAGCACCTATACAAGCCAAGCCTCATACAAGGCGCTGGGAATGTGGTCAACTTGCTGTGGTCTCTGATCTCAAAGATAGACAAACATTCAACTATTATAACACCCTGGTGCAAATGATGAGACAGCTGACCAAAGATGTAAAACTCCATCACTCCGCATGTGCCTATCTCCCGAAGTGACTGAGGTACTGTGCATGTCCGAGTGCTAGGGAGATTGTACCATCACAATGGCTACCACCAACCTAGTAGGGTTCTGTAGCACAGCAGAGACTGAGAAACAGAGGAAACAAACCTGTAGGCTTTGTATGTGCTATGGTCCTTCCTCTGCTCCTTTATCTTCATCCCCAATTACTCCTTCCTCCTGAACATAAACGGATTAAAAGGACCGGACTAGTTCAGAGCCTCTCACCGTCCCCTCCCCACTTCCCCCAAAGCCCTGACCACCAGCTTTAACCCCTGTGCCCAAGACAGGGCTTTTTCCATTCTGGGGATAACAGAAAAACACCTTACCTGAGATCAGGGGCTCTCACTATTTCTAAATAGAACTCAAAATGATCTGGGAGAGTCTGGCTAAAAATGGTTCCTCAGAAGCACTTTTGGAAACTTGACCAAGAAGTCAGAAAGGCCCTTCTTCTACTGTAGTCCGTCTGCTGATTTTGATTTCCCTCAGGGAGAAGGCAGGGTGGGGGTGGGGGATGGGAGACGCCGATTGGAGGTAGAACAGCTTCTGTCAATTCTCTGGCACGCTTTTAGATAAGTGTCATTCCTAGCACATGGTTTTCTATTTTTAG
Seq C2 exon
CCTGGAGAGGCTATGATGCTCGGAGGAAATTGAAGCAAAGAAGCCGGAGGAGGAGTGAGTCCGAGGCTCACATTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-Myo3b:NM_177376:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=5.5),PF0061222=IQ=PU(42.9=16.4)
A:
NA
C2:
PF0061222=IQ=PD(52.4=39.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAAATATTACCATGTCGAGCA
R:
GTGTGAATGTGAGCCTCGGAC
Band lengths:
238-1149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: