GgaINT0046673 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:23534459-23535828:-
Coord C1 exon
chr7:23535445-23535828
Coord A exon
chr7:23534484-23535444
Coord C2 exon
chr7:23534459-23534483
Length
961 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TAAAGGTACCTTCTCCGTGGGCA
3' ss Score
-1.32
Exon sequences
Seq C1 exon
CAGGGCACGAGGAACAGAGATAACTGCCTGGAGGGAGATGTGGGTGCAAGACTTTCACATCTCCAAAGTGAAGAGGGAGAGGCTTCCCCTGCTCCAGCACGGAGCAGCACGGAAAGAACCAGTAGCCCCAGGGAGCGGAGTGCCCTCTCTGACCCAGCAGAAAGCAGTTACAGCACTGTCTCAGATACGCTGAGGAGTAACAGTGGAGAGGTGGGAGAGCCAATTTACAATTCCCCTCAAGATGTGGAGTCTGACTATGACCACGATGAGTTGGATGGCTGTGGGGATGCAGGCAGTGCCTCAGCTGAGGCTCTGAATGGTGAGGAAAGTCTGAGGCACTCCCATGGCACCAGCCTGGACTCCAACCGGGGCAGCCTGGACTCG
Seq A exon
GTAAGAGTCTTCTTCCATTCATTTTTCTGGAGGTCAGAGTGTGACTTTGATATTGTAACATCCTTGCTTGCTTACTGGTGCCTGCTTGCTGTAGGTATACTTGCTAATATGTAACTCTCTTATATCAGCAATCGGTTTGGAAACGAAAGGGGGAGAGAGAGGCTGAAGGCCAGCAGGCTTGTGACTGTCCATTGTCCCTGGTACACAAGCTAGGACACACGTACCTAGGCTAGTTTAGATTGCTTCCATCACCAGATACCAGCATAAGATTAAAAGCAGGTAATTGACATCTTGGAGGTATATGTCCTGCCTCAGATCTCACAGAATTAGTCTGAGCTGCTGGTGGGCATTCCCAAGAGGAAATGGGAAAGGCTGGGGTTTGCTTTGTTCCCATCACTTGAAGTTCTGTTAGTGTTCAGAGTCAAGGGGTTACTTTCAGTTGGGGCGTGCAAATTGAGCTATCGTAAGGACAGAAGGAATCACTGTGCAGATCGGCATGGGTTCCAGTGCACGCAAAGACCAGGGAAGCTTTCTGTTCCTAAAGCTGGGCTGTTCACCTTGCACTTGAAGCATCTCAGCTTAAATCCCGCACTGGGCTTTCTGAGTGCCCCCAGGCTGGAGCTGCGTAAGAATGTCACAGCAAACCCACAAGAAACTCACAGGATGTCAGATGAGCCCACAAATGATTGTAAAGAGTTCAGGTGTGAAGCCAGTATCAGCCATAAAAAATTCTCCAGACGTGGTGTCTCAAAGCAGGGACTTGAATGACAAAATGTCTCTTAGAAAATTACTTACTAAGACATTCAGTTTCCCTCCTTTGTTTTGCTTTTGCAGTGGCAGATTTTGACTTCTCTTGAAAAATTGCATGTTTTTTTCCTGCTTGCCTTTCTCTAATGTCAGCTGCCAGCTGTCTGAATTTGTTATGATGTGATCTGCTTGAATAAAGGTACCTTCTCCGTGG
Seq C2 exon
GCAGGTACTCACAGATCACTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTGAAGAGGGAGAGGC
R:
CAGTGATCTGTGAGTACCTGC
Band lengths:
343-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]