GgaINT0046673 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21446660-21449593:-
Coord C1 exon
chr7:21448799-21449593
Coord A exon
chr7:21446784-21448798
Coord C2 exon
chr7:21446660-21446783
Length
2015 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
GATTCTTCTTTTTCTTTTAGTTT
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTGCAAACGGTAAAGACCGAGGAAGCAGATATTCCACTGCAAGAAGAAGAGAGGCGTCAGATGGAGGAGATCTTAAGGCTGGAGAAGGAGATCGAGAAGTTGCAGCAACAGAAAGAGGATCACATGTCTATCATCTGTGAAAACACCAGGAATGAAATCAACCGGCAGCGGGAGGAAGAGATCCAGAGGCTGGAAAAGGAGGCATCGAGGGTTGCCCAGGAGTTCCTGGAGCTGCTAGACTTTGGCAATCTGGATGAAAGCGTGCAGAACTTGGAGCGCTCACTGTCCAGTGAGGGGACGCTCAACATTGACTGCAGCCTCGTTGCCCCGCTGGCTGAAGATGAGGTGGATGAGGGTTTTCATGCTGATGATGAAGTACGGCCGACTTCCAATTTGGTGGCTGTCACTCAGCAGGGCACGAGGAACAGAGATAACTGCCTGGAGGGAGATGTGGGTGCAAGACTTTCACATCTCCAAAGTGAAGAGGGAGAGGCTTCCCCTGCTCCAGCACGGAGCAGCACGGAAAGAACCAGTAGCCCCAGGGAGCGGAGTGCCCTCTCTGACCCAGCAGAAAGCAGTTACAGCACTGTCTCAGATACGCTGAGGAGTAACAGTGGAGAGGTGGGAGAGCCAATTTACAATTCCCCTCAAGATGTGGAGTCTGACTATGACCACGATGAGTTGGATGGCTGTGGGGATGCAGGCAGTGCCTCAGCTGAGGCTCTGAATGGTGAGGAAAGTCTGAGGCACTCCCATGGCACCAGCCTGGACTCCAACCGGGGCAGCCTGGACTCG
Seq A exon
GTAAGAGTCTTCTTCCATTCATTTTTCTGGAGGTCAGAGTGTGACTTTGATATTGTAACATCCTTGCTTGCTTACTGGTGCCTGCTTGCTGTAGGTATACTTGCTAATATGTAACTCTCTTATATCAGCAATCGGTTTGGAAACGAAAGGGGGAGAGAGAGGCTGAAGGCCAGCAGGCTTGTGACTGTCCATTGTCCCTGGTACACAAGCTAGGACACACGTACCTAGGCTAGTTTAGATTGCTTCCATCACCAGATACCAGCATAAGATTAAAAGCAGGTAATTGACATCTTGGAGGTATATGTCCTGCCTCAGATCTCACAGAATTAGTCTGAGCTGCTGGTGGGCATTCCCAAGAGGAAATGGGAAAGGCTGGGGTTTGCTTTGTTCCCATCACTTGAAGTTCTGTTAGTGTTCAGAGTCAAGGGGTTACTTTCAGTTGGGGCGTGCAAATTGAGCTATCGTAAGGACAGAAGGAATCACTGTGCAGATCGGCATGGGTTCCAGTGCACGCAAAGACCAGGGAAGCTTTCTGTTCCTAAAGCTGGGCTGTTCACCTTGCACTTGAAGCATCTCAGCTTAAATCCCGCACTGGGCTTTCTGAGTGCCCCCAGGCTGGAGCTGCGTAAGAATGTCACAGCAAACCCACAAGAAACTCACAGGATGTCAGATGAGCCCACAAATGATTGTAAAGAGTTCAGGTGTGAAGCCAGTATCAGCCATAAAAAATTCTCCAGACGTGGTGTCTCAAAGCAGGGACTTGAATGACAAAATGTCTCTTAGAAAATTACTTACTAAGACATTCAGTTTCCCTCCTTTGTTTTGCTTTTGCAGTGGCAGATTTTGACTTCTCTTGAAAAATTGCATGTTTTTTTCCTGCTTGCCTTTCTCTAATGTCAGCTGCCAGCTGTCTGAATTTGTTATGATGTGATCTGCTTGAATAAAGGTACCTTCTCCGTGGGCAGGTACTCACAGATCACTGTCAAGTAATCTTTCAAGCCATGAATCATCCTGTTACAGTGCTTATCATGGCCTTGCCTGGTTTCTACCATTCTTCTTAAAATTTAAATAGAATTGGAGGATTTTATTGTGCTCCTCAATGAGGAAGACCCATGAAAGATCCAGTTGCACTGTCATGGCACGAGCCACAGGGAGAGGTAACTGCAGCTGGCTCAGGGTCCCATCAGTAGCTGCTAATCCAGTAGTACTTGCTCTTTGAAGCTCAATGGCAACAGAGGGAAAAGGCTTACATGGAAAAGGAATGAGGCAAAGAGGAGGGCAAAGGGGTTGCAGAGAGGGGTCAGAAATGGAAAATAAAAAGAAGCAATGTGCAGTTGGTGGAGGAAAAAGGACTAAAGAGCTGTTTTCGTTCCTATTAAATTAATGCAGCTCATTGCAGGAAGTTGTATTTAAGGTGAGAAAAAAGCACAATTTGGGATTCCACGTGTGAAGTACTTTCTTATGGCTGAGGGCAATTATCCAGTTGGAGAACAAGGACAAGTAAACACTGTATTATTATTTCAGTAATTTCAATCTTTGTTCTTTAGGATTCAGTTATTCTGGAATGTGCTTTTTTTTTTAATAAACTCATAGCAAGGCATTTCCTTGCCAGGAACAGATCAGTGCTCTGTCTTGTTCAGCTCGCTGACCTGTCTGCCAGAAAAATCTTCCAAAATGAGAAATTCTCTCTTGATCCCATTAAATTAGATTTTGGGCTGTGGGCTATGCCATGCAATAGGAAGGTTTGCTCCTTCAGGTAACTGGAGTTTTCTAACTGCGTCCACTGCTGAATGTCTCTCCCTTTCTGGTATGAAAATTCCCTGTTCTCTGGAGACTCTTGCTTAAGGCATTAATGGGTAAGCTGTCAAGCTTTACTTTTACTGTGCTGCTCTTTTTTTATAAAGAGTATGTGGTTTTCACCTTCTGATCATGTGATTCTGCGGTCTTGTTGCTTTGCTCCGGTCCTCCTGTGACTGGGAGGACCCGAGTAGAATGGATTCTTCTTTTTCTTTTAG
Seq C2 exon
TTTTTAGACAGTGAAGAGGAAGTGGATGTTTACATAGATACAGATGAAGAGTTTTGTAATGGACGTGTCACCATCTTCAATGGCTCAGGACCACCCTATTTTCACAGCTATCTCTACATGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.747 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]