GgaINT0046679 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:23529450-23530188:-
Coord C1 exon
chr7:23530095-23530188
Coord A exon
chr7:23529507-23530094
Coord C2 exon
chr7:23529450-23529506
Length
588 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTGTCTCTTTCGCTGTGCANGGA
3' ss Score
0
Exon sequences
Seq C1 exon
CGGTTGGTTTAATGTCCTGAGCCGAGTACACAGCGCTACGGCGCAGCAGCTGAGGGAAATGCAAGATGAACAGGCCAACCCAAAGAATGCTGTG
Seq A exon
GTGAGTTACTGTGCAACCAGTCCGTGGGCACGTCCAGAGCCATCTGCGTTTAACTATTTTGTGCGTGTTTTTCCAGCACGTGGCAGTGCTGTGGTTCATGAACTGTATAAGAGAACAGAGCAAAGCTGGTAGAACGGAGGGTAAGCAGTGAGGAGCGGGGTGGTTGTCGTGGGTATCAGCTTGATCACCGGTGGCTCTCCTCTTTGGTTCGCCTCTTGCAAATGAAATGTTTTTGGGTGGGATTGTGGCACTAGGCTTTTTGTCATGGTTTTCAAGACGGAAGATAGAGAGTCGAGAAGAGCAGTGAGTCTTACTGGCATTGAGATGTGGTGGCAGAGGCTATTTCAGACCTTCATAGTGCTGTCTGGAAATGTGCAGCTCTTTCCTCCTGTCCTCTGGAGTCCTTGCGCACCTTCTCATGTTGTTAGGGAGTAAAGATGACTCACTCATGCCTTTCTCATATGCTCATTTCAACTCAAGCTATTGGAATTCATAAGGATGTTTTCAGGTCCAATCTTATTCACCAAGAATAATGCCTGTAATTTAAGATGTGAGCAATTCCTGTTGCCTGTCTCTTTCGCTGTGCAN
Seq C2 exon
GGAACCCTGGATGTTGGCCTTATTGACTCCGTCTGTGCCTCAGACAACCCTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(11.2=34.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]