GgaINT0046679 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21442805-21443542:-
Coord C1 exon
chr7:21443449-21443542
Coord A exon
chr7:21442861-21443448
Coord C2 exon
chr7:21442805-21442860
Length
588 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTGTCTCTTTCGCTGTGCAGGGA
3' ss Score
9.96
Exon sequences
Seq C1 exon
CGGTTGGTTTAATGTCCTGAGCCGAGTACACAGCGCTACGGCGCAGCAGCTGAGGGAAATGCAAGATGAACAGGCCAACCCAAAGAATGCTGTG
Seq A exon
GTGAGTTACTGTGCAACCAGTCCGTGGGCACGTCCAGAGCCATCTGCGTTTAACTATTTTGTGCGTGTTTTTCCAGCACGTGGCAGTGCTGTGGTTCATGAACTGTATAAGAGAACAGAGCAAAGCTGGTAGAACGGAGGGTAAGCAGTGAGGAGCGGGGTGGTTGTCGTGGGTATCAGCTTGATCACCGGTGGCTCTCCTCTTTGGTTCGCCTCTTGCAAATGAAATGTTTTTGGGTGGGATTGTGGCACTAGGCTTTTTGTCATGGTTTTCAAGACGGAAGATAGAGAGTCGAGAAGAGCAGTGAGTCTTACTGGCATTGAGATGTGGTGGCAGAGGCTATTTCAGACCTTCATAGTGCTGTCTGGAAATGTGCAGCTCTTTCCTCCTGTCCTCTGGAGTCCTTGCGCACCTTCTCATGTTGTTAGGGAGTAAAGATGACTCACTCATGCCTTTCTCATATGCTCATTTCAACTCAAGCTATTGGAATTCATAAGGATGTTTTCAGGTCCAATCTTATTCACCAAGAATAATGCCTGTAATTTAAGATGTGAGCAATTCCTGTTGCCTGTCTCTTTCGCTGTGCAG
Seq C2 exon
GGAACCCTGGATGTTGGCCTTATTGACTCCGTCTGTGCCTCAGACAACCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(11.2=34.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]