GgaINT0046940 @ galGal3
Intron Retention
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21345092-21345216:-
Coord C1 exon
chr7:21345190-21345216
Coord A exon
chr7:21345187-21345189
Coord C2 exon
chr7:21345092-21345186
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCTTAACCC
5' ss Score
-20.92
3' ss Seq
TTACATTCCTTGACTCTTAACCC
3' ss Score
-4.39
Exon sequences
Seq C1 exon
ATTTTCTGGCTTACATTCCTTGACTCT
Seq A exon
TAA
Seq C2 exon
CCCACATTATTCAGCATGCTTATCATGTGCACTATTTTGACCAACTGTGTATTTATGACCATGAGTAACCCTCCTGACTGGACGAAGAATGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009:ENSGALT00000017933:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(0.7=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTTACATTCCTTGACTCT
R:
TCCAGTCAGGAGGGTTACTC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]