GgaINT0048927 @ galGal3
Intron Retention
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22767824-22771106:-
Coord C1 exon
chr7:22770984-22771106
Coord A exon
chr7:22767892-22770983
Coord C2 exon
chr7:22767824-22767891
Length
3092 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCTATGTTCCTTCTTCATAGGAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTCTTAGCTTTGGTATTTGTCAGAAAACTCATGGATTTCTTTTTCACTAAACGGGAGCTCAGTTGGTTAGATGATTTGATGCCTGAGAGCAAGAAAAAGAAACTAGAAGATGCTGAGAAAGAG
Seq A exon
GTGGGTCCTGGTTTCAGGTGTGTGTTCTTTTTGTTTTGGGATTGTGGATGGTTTTGTTGTTGTTTTCCATTTGGTTTGGTAGGTTTTATTTTTTCTGTAACACATTACCAATATCTCCTCTAGACAACTAGAGAAAATTCTGTAATGAAGGCATATTCAATGCAACAGGTAGATTTGCTATACCTTGGATGAGCATTTCCCTTCTGCCACTGCAGAAACAATTTACTTCCACTTTCTAGTGAAAAATGTCAGTGACTTTGCTTACCCTGTTAACCGAATCTTCAGACTTTTGACTTTAGTTTTCTCATCAGTTTTGCATCTGATAGCATTTTCCCCGAGACTGTGCTTCTTGAGTTACTTGTTTGAATATCTTGTAAAGCTGGGGGAATATAAAGTAACTTCCTGTGTAGGGGCCTGATGGCTTTCTCCTTTGTTGCCGATATTTATAGCTACCTGATTGATGCCAACTGTTAGGGGGCATTAGGACTGTGTCCCTAAGTCATAGGACTAAATAAATGAAAGTCAGGTCTTGATAGAGAAGCACTAGCTGTGGGAGCAGTTGTAAGAATATGTCAGTGCCTGGTTCTTTTAAATGTCAGTTGTGTGTCCTGCCCCAGTATGATGTAAGGTTGTTGTGGCGTTAAGAGGCAAAGGTCTAAGCTGTTCCAGTGTTGTCCTGGAAGGCTGTGGTCATTTCAGGAAGGAGTGCTGTAGGGACATTTTTGCACACAATTTCTAAGTTACCCTGAAGACCTCTGCAAAGGCCTGGGACCCATGAGGCATAAAATTTTGGTGATACAAAGGTACTGCAAGAACTAGACAGTGTGAATGGAAAAATCAGCAATTTATCCTCAGGGAAGTCATGAGGTATCTGACACCAGTGAAATTATATATGTGTAAGGATTCCCCTCGCTAAGTCTGTTTACAGAAATAGGACACGAGCTAATAAGTTGAACGTAGTCATGAGGACTAACTTTCTCTCCCTTTTGCATTCTTTTGTGGCCCTTGACAACTTACTGCCTCAGCTGTGATCTGGAGAATGTAACTTTGCTTCCTTTGATGCATGTAATGTACTTTAACAGAATTCATTTTTGGGGAAAAGCCCTACCTAGGTAATAAATACTATGGTTACTATTTATGACATGCCTGCAAGGCTGCTAGGATGAAGTTAAAATGCATGGTTTGATTTTTTTCCCCTTTGAACTACAAAAACAAACAAACAAACAAAAGAAAGAAACAAACAAAAACAACAAAACAACAGTGTTATTTAATCACAGTATTTAGCTTTCATAATAATTCAGAGTAACAAAAAGTAATTAAGGTATCTCTCTTCTTTTGGATCTGGTTATTGGAAACATTTCTTTGTTACTCATATTTTGGTTATATGTCACTTTTCTTCTCATACTTGGTAAGATGGCATCATAAAACAATCTACTGGGAAAATCTACTGGTGTTACTTTATTTCATTCACTGTCTGTTTTGAGAGGCTATTTTTACACATTTTGGCATTTCTAAATATTTGGAGCTATTATTAAAACTGTTCAACTGTCAAAAAACTTATGAAGCTGTGAAGCCTGGAAATGACAAAATTAACTAGTAATAAAACTTCTGACATGTAGCCTAAGGAATTAATTGGAGAGTTGCTATCACACGGCTTTTAAAAATAGAAGTATTCTACCCACAAGAATATTCAGAAATATAGTTGACAAGATCTGAAACTTCATTGGATCCTAACTTCATCACTTAAGTTGTTTTTATATTTTTAGGCTGTGTTTTTCCAAGGCTTTCTACATTTATAGTGGATATTTTTTTATGCCTTCTTCTCGCTAATCTTCCTTTGTCAGCAATTTGGTGTAATCAAGTCTTTCTGAGACCAGAATGAACAAAAGTGACTTCTCTCATTTGGAGGAAGAAACAAATCACAACTTTTAAAATAGCTGTAGTAGTAAAACATGGAGGAAACTGTGGAAAATCATCTCGACTCTTCCAGCTAATGCCAGCTTACCAATGTGTGTGAGATATGTCAGGTTTTGAGTGGCCTGCCAGGTAATGGCATGCTTCTCTTTTTGGGAAAGCTAATGTCATTTTAAGTCACGCTTTCTGCTAAACACCAGGGTAAACTGTTACCAAGCCATCTAATACAGGGAAAAAAGAACAGGTCTTTGTGTGTCTGCCATGCTCACACACACACAGTGCAGTGGTACAGGGCAGGATCTGATAGTTATTCCACATGAAGGAATATTAACCTCCTGGCAGCTGTTCTGCTACATATGCACTGATTTACTTTCATAATTTGCTTGATCACAAGAGCTATATGGGATCACGGGGAAGCATACAGAATCACCTACTTACATGGTTGCCTGTAATTTAGGCCTTAAGCCACTCCTATTTCAGAGATATTCATCATAGCTAATGTCTTGTGATGACTGCTGTGGTTTTCCTGACCTAACAGTGGTGGGGAGCCTTCAGTCTTCCTTCAGCTTAAATCTTTGGAGCCATGAGCTGTTATGGTCTGAAAGACAGACAGTTTTTTCTTAGTTCTTGCAGGCAGGAGGCAGTACTTAAGGGAGGCTGTTTTGTTCTCCCCTCCCCCTCAGATGAAGATTTACTAAAGTTATAATCATTTGACAATAGATTTGTTGTAGATACATCTAGTTCTCATAGAATCATAAAAATTTATTTTCTCTGTTCCAGTGAAAATTAATATTGGCATCTTGTTGCACTGCCTTTCATTGCAATAAAACTTTAATCAGTATTTAGACTTTATGCGCAAACTTATATTTGACTGCCCTAATTTCTGTATGTTAGTGATGCTATGTGTGTGTCTAGTTATGTGTGATGTTTAGCATTCACCATCTCATTACTAAGTTTTCTTTGTCTTTATTAAAAAAGTGTATCCTCTATTTGGTATTGATAAGTAACATTATTTGGAGACATTGCTTTGAAATAGGGGGGTGTCAATCTTGAATATTCAAATTAAGAGTTGAAGAGAATCTTATTATAGAAATCATTAACAAATAGTTAATAAGATGCTTAAAGTTAACTTGTCATAACAATATATCCTGTCTCACATCTATGTTCCTTCTTCATAG
Seq C2 exon
GAAGAACAAAGTATGTTAGCAATGGAGGAGGAAGGGACTGTTCAGTTGCCGCTAGAAGGACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120:ENSGALT00000018117:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]