GgaINT0048927 @ galGal4
Intron Retention
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20686512-20689794:-
Coord C1 exon
chr7:20689672-20689794
Coord A exon
chr7:20686580-20689671
Coord C2 exon
chr7:20686512-20686579
Length
3092 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCTATGTTCCTTCTTCATAGGAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTCTTAGCTTTGGTATTTGTCAGAAAACTCATGGATTTCTTTTTCACTAAACGGGAGCTCAGTTGGTTAGATGATTTGATGCCTGAGAGCAAGAAAAAGAAACTAGAAGATGCTGAGAAAGAG
Seq A exon
GTGGGTCCTGGTTTCAGGTGTGTGTTCTTTTTGTTTTGGGATTGTGGATGGTTTTGTTGTTGTTTTCCATTTGGTTTGGTAGGTTTTATTTTTTCTGTAACACATTACCAATATCTCCTCTAGACAACTAGAGAAAATTCTGTAATGAAGGCATATTCAATGCAACAGGTAGATTTGCTATACCTTGGATGAGCATTTCCCTTCTGCCACTGCAGAAACAATTTACTTCCACTTTCTAGTGAAAAATGTCAGTGACTTTGCTTACCCTGTTAACCGAATCTTCAGACTTTTGACTTTAGTTTTCTCATCAGTTTTGCATCTGATAGCATTTTCCCCGAGACTGTGCTTCTTGAGTTACTTGTTTGAATATCTTGTAAAGCTGGGGGAATATAAAGTAACTTCCTGTGTAGGGGCCTGATGGCTTTCTCCTTTGTTGCCGATATTTATAGCTACCTGATTGATGCCAACTGTTAGGGGGCATTAGGACTGTGTCCCTAAGTCATAGGACTAAATAAATGAAAGTCAGGTCTTGATAGAGAAGCACTAGCTGTGGGAGCAGTTGTAAGAATATGTCAGTGCCTGGTTCTTTTAAATGTCAGTTGTGTGTCCTGCCCCAGTATGATGTAAGGTTGTTGTGGCGTTAAGAGGCAAAGGTCTAAGCTGTTCCAGTGTTGTCCTGGAAGGCTGTGGTCATTTCAGGAAGGAGTGCTGTAGGGACATTTTTGCACACAATTTCTAAGTTACCCTGAAGACCTCTGCAAAGGCCTGGGACCCATGAGGCATAAAATTTTGGTGATACAAAGGTACTGCAAGAACTAGACAGTGTGAATGGAAAAATCAGCAATTTATCCTCAGGGAAGTCATGAGGTATCTGACACCAGTGAAATTATATATGTGTAAGGATTCCCCTCGCTAAGTCTGTTTACAGAAATAGGACACGAGCTAATAAGTTGAACGTAGTCATGAGGACTAACTTTCTCTCCCTTTTGCATTCTTTTGTGGCCCTTGACAACTTACTGCCTCAGCTGTGATCTGGAGAATGTAACTTTGCTTCCTTTGATGCATGTAATGTACTTTAACAGAATTCATTTTTGGGGAAAAGCCCTACCTAGGTAATAAATACTATGGTTACTATTTATGACATGCCTGCAAGGCTGCTAGGATGAAGTTAAAATGCATGGTTTGATTTTTTTCCCCTTTGAACTACAAAAACAAACAAACAAACAAAAGAAAGAAACAAACAAAAACAACAAAACAACAGTGTTATTTAATCACAGTATTTAGCTTTCATAATAATTCAGAGTAACAAAAAGTAATTAAGGTATCTCTCTTCTTTTGGATCTGGTTATTGGAAACATTTCTTTGTTACTCATATTTTGGTTATATGTCACTTTTCTTCTCATACTTGGTAAGATGGCATCATAAAACAATCTACTGGGAAAATCTACTGGTGTTACTTTATTTCATTCACTGTCTGTTTTGAGAGGCTATTTTTACACATTTTGGCATTTCTAAATATTTGGAGCTATTATTAAAACTGTTCAACTGTCAAAAAACTTATGAAGCTGTGAAGCCTGGAAATGACAAAATTAACTAGTAATAAAACTTCTGACATGTAGCCTAAGGAATTAATTGGAGAGTTGCTATCACACGGCTTTTAAAAATAGAAGTATTCTACCCACAAGAATATTCAGAAATATAGTTGACAAGATCTGAAACTTCATTGGATCCTAACTTCATCACTTAAGTTGTTTTTATATTTTTAGGCTGTGTTTTTCCAAGGCTTTCTACATTTATAGTGGATATTTTTTTATGCCTTCTTCTCGCTAATCTTCCTTTGTCAGCAATTTGGTGTAATCAAGTCTTTCTGAGACCAGAATGAACAAAAGTGACTTCTCTCATTTGGAGGAAGAAACAAATCACAACTTTTAAAATAGCTGTAGTAGTAAAACATGGAGGAAACTGTGGAAAATCATCTCGACTCTTCCAGCTAATGCCAGCTTACCAATGTGTGTGAGATATGTCAGGTTTTGAGTGGCCTGCCAGGTAATGGCATGCTTCTCTTTTTGGGAAAGCTAATGTCATTTTAAGTCACGCTTTCTGCTAAACACCAGGGTAAACTGTTACCAAGCCATCTAATACAGGGAAAAAAGAACAGGTCTTTGTGTGTCTGCCATGCTCACACACACACAGTGCAGTGGTACAGGGCAGGATCTGATAGTTATTCCACATGAAGGAATATTAACCTCCTGGCAGCTGTTCTGCTACATATGCACTGATTTACTTTCATAATTTGCTTGATCACAAGAGCTATATGGGATCACGGGGAAGCATACAGAATCACCTACTTACATGGTTGCCTGTAATTTAGGCCTTAAGCCACTCCTATTTCAGAGATATTCATCATAGCTAATGTCTTGTGATGACTGCTGTGGTTTTCCTGACCTAACAGTGGTGGGGAGCCTTCAGTCTTCCTTCAGCTTAAATCTTTGGAGCCATGAGCTGTTATGGTCTGAAAGACAGACAGTTTTTTCTTAGTTCTTGCAGGCAGGAGGCAGTACTTAAGGGAGGCTGTTTTGTTCTCCCCTCCCCCTCAGATGAAGATTTACTAAAGTTATAATCATTTGACAATAGATTTGTTGTAGATACATCTAGTTCTCATAGAATCATAAAAATTTATTTTCTCTGTTCCAGTGAAAATTAATATTGGCATCTTGTTGCACTGCCTTTCATTGCAATAAAACTTTAATCAGTATTTAGACTTTATGCGCAAACTTATATTTGACTGCCCTAATTTCTGTATGTTAGTGATGCTATGTGTGTGTCTAGTTATGTGTGATGTTTAGCATTCACCATCTCATTACTAAGTTTTCTTTGTCTTTATTAAAAAAGTGTATCCTCTATTTGGTATTGATAAGTAACATTATTTGGAGACATTGTTTTGAAATAGGGGGGTGTCAATCTTGAATATTCAAATTAAGAGTTGAAGAGAATCTTATTATAGAAATCATTAACAAATAGTTAATAAGATGCTTAAAGTTAACTTGTCATAACAATATATCCTGTCTCACATCTATGTTCCTTCTTCATAG
Seq C2 exon
GAAGAACAAAGTATGTTAGCAATGGAGGAGGAAGGGACTGTTCAGTTGCCGCTAGAAGGACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120:ENSGALT00000018117:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.207
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]