GgaINT0049056 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19011560-19012696:+
Coord C1 exon
chr7:19011560-19011701
Coord A exon
chr7:19011702-19012489
Coord C2 exon
chr7:19012490-19012696
Length
788 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTTTCTTCTTCTCTTCTAGACA
3' ss Score
11.79
Exon sequences
Seq C1 exon
TAAATGTCCAGAAGAGTTTATCTGTGTGAAAGCAGGTAGAAACCCCAACTATGGATATACTAGCTTCGACACATTCAGTTGGGCTTTCTTGTCCCTGTTTCGACTTATGACACAGGACTACTGGGAAAATCTTTATCAGCTG
Seq A exon
GTGAGTAAACAGTAAAAATTACCTAGTGTCTGACTGTCCCCAAAACAAACATGGAAAGGACCTTTGTTTATATTATGTACCACAGCTATAGACAGCAGTTGAAAAAAGTGCAGCATTTAGAAACAAATTCAGGTGCAGAATTAAGCAGTTACGGGCACTTAGTTGAAAATCTCACGTGAGTTCTGAGTAGGTACACAAGGGTTTTTTGTTCATTGCTTTCATTTTTTACAGTGTATATTCTCTGACAGCAAAATGTGTGTGAATCTTAATCTGTGCACCTTTAATCCTGTTCTTGGTTACTAAAAGCACATCTTTGTATAAAGTAATTTTCTTACCATAGTTTTCCATTGCATCACATGTAAAAATTTGTTAATTATAGTAAGCATTATCTTTAAAATTATTTATTAATTTGTGCCATCTTTAGCTCTTTTTTTATTCCAAGCGGAAGCCATGTTAATACGCTACAAGTATACTAAGCATCCAATCTTTAATGTGTGATTTACATTACTTACACCGATCATACTTTCTTCTCAAGATTGTTAGGCATCAAAGTAGGTTTGCCACAAAGCAACATGATCCTTAATTTTTTTTCATATACATTAAAGCTTCTTTTATTTTCATTGCTTTGTAATTCAGATAATTTTATATAATCTTACAGACAGAAGAACAACTGAATTTTAGTTTTGTACTTTTCAGACTTGGTCAGTGTTTCTGGATAGTGGAATTGATGCTTGTCTTCACCAGATTATTTTTCTTTTTTTTCTTTTATTTTTCTTCTTCTCTTCTAG
Seq C2 exon
ACATTACGAGCTGTTGGCAAAACATACATGATATTTTTTGTTCTGGTCATTTTTCTGGGTTCCTTCTATTTGATTAATTTGATTTTGGCTGTGGTTGCCATGGCCTATGAAGAACAAAATCAAGCAACTATGGTTGAAGCAGAACAGAGGGAAGCAGACTTGCAGCAGATGCTTGAACAGCTGAAGAAGCAGCAAGAAGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(29.2=100),PF0253517=Zip=PU(12.5=43.8)
A:
NA
C2:
PF0052026=Ion_trans=PD(19.3=44.9),PF0253517=Zip=FE(40.5=100),PF0293211=Neur_chan_memb=PU(42.9=91.3),PF100694=DICT=PU(55.1=71.0),PF0310514=SPX=PU(18.0=58.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGAAGAGTTTATCTGTGTGA
R:
TGAGCTTCTTCTTGCTGCTTCT
Band lengths:
344-1132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]