GgaINT0050364 @ galGal4
Intron Retention
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17463148-17464251:-
Coord C1 exon
chr7:17464107-17464251
Coord A exon
chr7:17463289-17464106
Coord C2 exon
chr7:17463148-17463288
Length
818 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTGTTTTTTTTTTTTTCAGAAT
3' ss Score
11.43
Exon sequences
Seq C1 exon
CAAAGCTGGAATCAGTGAGATGTTTGAAGGACACCAGGGACCAATCACAGGTATCCACTGCCATGCAGCAGTTGGACCTGTAGACTTCTCACATCTTTTTGTCACCTCTTCTTTTGACTGGACAGTAAAGCTTTGGACAACGAAG
Seq A exon
GTAACTATAATAGATAGTTCAGTGGTTTTCTTCATAGTCCTTGACACAAGGTGGTGCTATAATGTAAGCTACTCAACTCAGGAAACTTAGGTAAACCGAAGACAGACTTTGTGAAGCTCTCTAGACCCTTAGCAGTAGTCCAGTTGATTCTTAGTGCTTGTTTTATGGTTTACCGCAAAGAGAAGACAACTGATGAATGAAACCAATTAACAACATAAAGATGTCTTTGCTTTCAGATTGTACGTCATTTGTGTACTTCTGATCCATTCTGTTCATCCGTTTGCCCTTTGCTATCAGCAATGATTATAGTGTAATCAAATACAAATCATTGTTATATTCAGTTACTTCATTTAATGCATAAGACAAATGTTTTGCTACAATTTTGTGGAGGACTAGGAGAGAGCACCAAAACTAATCTCAAACTGCATTTAGAGACTCGCAGTTGACCACGTAGTATCCATCTTGCTGGAATTACTACTTCTGCTGTTGTGCTGATTCCCTGAGGAACGTAATGCTGTCACTGAATTAGCATTTTCTTGATGTACAAAATTTTTAATGTGTTAAGTTTAAAATCTCTTACAGTATTGGCTTGCTACTGATTTCTTTATAATAGCTTCCAAGATAAGACTGCATGCATCGGAAAGCATGGCTTTGATAATGCCCTTAGTTTCTGGCTGCTTTTTGCAGGGGCTGTTTGTTGTTGTGGTTCTTTTTACGCTATTGATAAGTTCTATGTTTTGCCTTACTTGTCAGACTTAGAATTTGAATTGCAGACTTGGGATATCGCATTATGTCTGTTTTGTTTTTTTTTTTTTCAG
Seq C2 exon
AATAACAAACCTCTCTACTCATTTGAAGACAACTCAGATTATGTTTATGATGTTATGTGGTCTCCAACGCACCCTGCCCTGTTTGCCTGTGTGGATGGGATGGGCCGGCTTGACCTATGGAATCTCAACAATGACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551:ENSGALT00000015547:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCTGGAATCAGTGAGATGT
R:
CTCAGTGTCATTGTTGAGATTCCA
Band lengths:
286-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]