GgaINT0066425 @ galGal3
Intron Retention
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52387055-52389337:-
Coord C1 exon
chrZ:52389248-52389337
Coord A exon
chrZ:52387196-52389247
Coord C2 exon
chrZ:52387055-52387195
Length
2052 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AATTGGCTTTTATCCTTCAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTTTTCCTGAAGTACCTGAATTTTGCTTCCTTAAACCTGAAAATTTATCACTTGAGTTATCTTCACAACTGTGAGACTCGAAGAGGCCAG
Seq A exon
GTAAGAGCAAGGATGCAGATTGGGCTATATCTTAAAATCAAAAGCACTTTCTCTGGTTTCAAAAATTTAGATGATCTGCTTCAGAGATTTGTGTCTGAAGAGCAGAAAGAAAAGGCAGCCCCTGGATGCTTTCAAATACTCCCTCTTCCTCAGAGTCCCTCATCACCATATCTGTCTGCTGGTAAATACAGGTATTGTGCAGAGTTCAGATGATGGAACACTCCTGAGGCATTTATCCACTTCAGGTAGCAGCACTGAAAGATCTCCCAAAACAATTGAGAACACTATACTATTATCTTTTATGTTTATAAAAATACTATAGGATTTCTTCTTAGTGAAAGCAGAATAATTCTCATATTCTATTTCTCTCCTTCAGTAGAAATTAGTATGGAGGATGAATATCGGGTATTTTGAATGGAACCTGTTCAGCCACCAGTTCTTCCCTTGATTTGTTCTTTGCACAATTCTTTCCACAAACATAAGACAATGAATGATGGCCAGGTGATACAGCCATCTAGCAATGCTGAGTAATTTAACTAAGGTAGAATTAGCTAAAGTTCATTCCTCCTGAGGGCTTAGCAGGTGTCGGGGAGGCATGGCAGGGTCTAAAAGGAAAACACATACCCAAGATGTGGAAGATCCATTGCATCCTGCAGGGTGTTCTGACCTGGGCTTGAACCCTGGAATCAGCTGTTCACATGTCACCGCTGTATTAGCAGATCCCACAAAAGGTGGAAAAGAAAAACTAAACTAGCTCAACTAGCAGACGCTCGGCCATCTAGATCAAAAGGTATCTGCAAGAGTTAACACTGTTTGTTGCTTTAGACTTAAACCTATCTCAGTACAGTCTGAGCAAACAACATTCTCAAAGATGGGTAAGACTTTTATATTGCAAAAACATCTGTAAGTAAAACGTCATGTGCAAAGAGAATACAGCCTGCCTGTGCAGACTCTGTTAGAGTCTTAGTAGAAGACCACATAACATTTTGCCAGAGTTCTTTACATCGTTCCATGAACTGCCCTTTCTTCATGCATTTCCTTCAGTCCTTGTCACCGCATTTGTGGCTTTCAGCCTCATGTATTGCATGCAGTAAAAAAGCAGAAGCAAGCCATTGTTCATTTTCCATTAACAATCTGCATGGCAACAACACTGTCCTATCTGTGGGATGCTGGTAGCATTTAGCACCTCAGGTTCTACAACAGTGCCAGAGCTTTTGCATCCCATGGGTCAGAAACAGAGAGCGATGCAGGCCAGAACTGTGTATGATGTTTGCTAGCCCTCAGTGAAGCAATGAGGCACAGTTTTCCTGATTGTGGCCAAGCAGTAGTGCTCCATGTTCCAAGGATAGGTCCAGTCAGCTTCAGGTAGAGGCTCCCAGCACTTCTAGGCACTGCCACTGCTGTTTCCTGGGCTCTGAGAGCAAAGCACCCGATCAGGCACACAGGCACTAGCTAAGGTCAGCATTTGCATAGATGGCTTCCTTACCATTTCAGAGACAATAAAGCTCTCCCTTATGACCACAAAGACTTCCTTTTTACTATTAGAATCATCTGCCTAATTCACTGCAGAACCTCCACTTTTACAGATGAAATGGCCTAGTAGCAACAGCTTTCTTAAGGATATATCCATACTGCATTGCATGGGGAAGAGGGTCATAGGCCACTGCACACACAAGAACTGTGCAAAGGCTTTAAGGAAAGAGTTGATTCAGATATTTCCAACTCCAGCCTTTAGACTTTGCAAGATTTTACTCATGGATATAAAAAGTAAGTGTACAGACTGTTTGGCACCATTACCTTTGTAAGACTGGCCCTTAGCATAGTACTCCGTGATGGCATGACTAGTCCTCGGAGTGCATCTCTCCTTAGTAATTCCCAGTGTAAATAAGCAATTAATTTACACTTTGCAGTTGCACTTTTGTTGCTATTGCACTAGGACAGTAGTATTAAAAAAAAAAAAAAAACCCAAACAGTTTCCTTCTTAATGCAAACACATCTGGGAAGTCAAGCTTCAAGGGAAAGCTAAGCTTACAATTGGCTTTTATCCTTCAG
Seq C2 exon
GTGCTGCTGTGGTCAGCTAACAAGGTCTTTGAGGAACTGACAGATATTGAGAGGCAATTCCACAAGGCCTTCTACACTGTGAGAGCATATCTGAATTGTGACAGGTACTCAGTAGGCCTCCTGGACATGACAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(8.0=40.0)
A:
NA
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]