GgaINT0066425 @ galGal4
Intron Retention
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53328819-53331101:-
Coord C1 exon
chrZ:53331012-53331101
Coord A exon
chrZ:53328960-53331011
Coord C2 exon
chrZ:53328819-53328959
Length
2052 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AATTGGCTTTTATCCTTCAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTTTTCCTGAAGTACCTGAATTTTGCTTCCTTAAACCTGAAAATTTATCACTTGAGTTATCTTCACAACTGTGAGACTCGAAGAGGCCAG
Seq A exon
GTAAGAGCAAGGATGCAGATTGGGCTATATCTTAAAATCAAAAGCACTTTCTCTGGTTTCAAAAATTTAGATGATCTGCTTCAGAGATTTGTGTCTGAAGAGCAGAAAGAAAAGGCAGCCCCTGGATGCTTTCAAATACTCCCTCTTCCTCAGAGTCCCTCATCACCATATCTGTCTGCTGGTAAATACAGGTATTGTGCAGAGTTCAGATGATGGAACACTCCTGAGGCATTTATCCACTTCAGGTAGCAGCACTGAAAGATCTCCCAAAACAATTGAGAACACTATACTATTATCTTTTATGTTTATAAAAATACTATAGGATTTCTTCTTAGTGAAAGCAGAATAATTCTCATATTCTATTTCTCTCCTTCAGTAGAAATTAGTATGGAGGATGAATATCGGGTATTTTGAATGGAACCTGTTCAGCCACCAGTTCTTCCCTTGATTTGTTCTTTGCACAATTCTTTCCACAAACATAAGACAATGAATGATGGCCAGGTGATACAGCCATCTAGCAATGCTGAGTAATTTAACTAAGGTAGAATTAGCTAAAGTTCATTCCTCCTGAGGGCTTAGCAGGTGTCGGGGAGGCATGGCAGGGTCTAAAAGGAAAACACATACCCAAGATGTGGAAGATCCATTGCATCCTGCAGGGTGTTCTGACCTGGGCTTGAACCCTGGAATCAGCTGTTCACATGTCACCGCTGTATTAGCAGATCCCACAAAAGGTGGAAAAGAAAAACTAAACTAGCTCAACTAGCAGACGCTCGGCCATCTAGATCAAAAGGTATCTGCAAGAGTTAACACTGTTTGTTGCTTTAGACTTAAACCTATCTCAGTACAGTCTGAGCAAACAACATTCTCAAAGATGGGTAAGACTTTTATATTGCAAAAACATCTGTAAGTAAAACGTCATGTGCAAAGAGAATACAGCCTGCCTGTGCAGACTCTGTTAGAGTCTTAGTAGAAGACCACATAACATTTTGCCAGAGTTCTTTACATCGTTCCATGAACTGCCCTTTCTTCATGCATTTCCTTCAGTCCTTGTCACCGCATTTGTGGCTTTCAGCCTCATGTATTGCATGCAGTAAAAAAGCAGAAGCAAGCCATTGTTCATTTTCCATTAACAATCTGCATGGCAACAACACTGTCCTATCTGTGGGATGCTGGTAGCATTTAGCACCTCAGGTTCTACAACAGTGCCAGAGCTTTTGCATCCCATGGGTCAGAAACAGAGAGCGATGCAGGCCAGAACTGTGTATGATGTTTGCTAGCCCTCAGTGAAGCAATGAGGCACAGTTTTCCTGATTGTGGCCAAGCAGTAGTGCTCCATGTTCCAAGGATAGGTCCAGTCAGCTTCAGGTAGAGGCTCCCAGCACTTCTAGGCACTGCCACTGCTGTTTCCTGGGCTCTGAGAGCAAAGCACCCGATCAGGCACACAGGCACTAGCTAAGGTCAGCATTTGCATAGATGGCTTCCTTACCATTTCAGAGACAATAAAGCTCTCCCTTATGACCACAAAGACTTCCTTTTTACTATTAGAATCATCTGCCTAATTCACTGCAGAACCTCCACTTTTACAGATGAAATGGCCTAGTAGCAACAGCTTTCTTAAGGATATATCCATACTGCATTGCATGGGGAAGAGGGTCATAGGCCACTGCACACACAAGAACTGTGCAAAGGCTTTAAGGAAAGAGTTGATTCAGATATTTCCAACTCCAGCCTTTAGACTTTGCAAGATTTTACTCATGGATATAAAAAGTAAGTGTACAGACTGTTTGGCACCATTACCTTTGTAAGACTGGCCCTTAGCATAGTACTCCGTGATGGCATGACTAGTCCTCGGAGTGCATCTCTCCTTAGTAATTCCCAGTGTAAATAAGCAATTAATTTACACTTTGCAGTTGCACTTTTGTTGCTATTGCACTAGGACAGTAGTATTAAAAAAAAAAAAAAAACCCAAACAGTTTCCTTCTTAATGCAAACACATCTGGGAAGTCAAGCTTCAAGGGAAAGCTAAGCTTACAATTGGCTTTTATCCTTCAG
Seq C2 exon
GTGCTGCTGTGGTCAGCTAACAAGGTCTTTGAGGAACTGACAGATATTGAGAGGCAATTCCACAAGGCCTTCTACACTGTGAGAGCATATCTGAATTGTGACAGGTACTCAGTAGGCCTCCTGGACATGACAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(8.0=40.0)
A:
NA
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]