GgaINT0070369 @ galGal3
Intron Retention
Gene
ENSGALG00000010566 | NPNT
Description
NA
Coordinates
chr4:39974748-39982697:-
Coord C1 exon
chr4:39982597-39982697
Coord A exon
chr4:39974799-39982596
Coord C2 exon
chr4:39974748-39974798
Length
7798 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TTTGGATATTTGTTTTACAGCTT
3' ss Score
7.25
Exon sequences
Seq C1 exon
GTGGCCCAGACAAATAGTCTCCTCTGCAGGACTGTGCCGGTATGGAAGCAGAATTGATTGCTGCTGGGGCTGGGCCCGTTTGGCCTGGAGACAGTGCCAAC
Seq A exon
GTGAGTACCATTGCTGCTGGGGCTTCTAGTCACTTGTAGGAGAGGCTTGTACGTGCACCTGGCCATCCTTCACACAGTCTTATAATGGACGGCCAAGGCTTTTGCACGTGTGAGTCTGACTTACTTAAAAGGATGTCGTCAGGTGAAAATCCAGTCTGTTATTAACGGTTCTAAAGATGATTTCAATCAGTGAAAAGTAAACTTTGGGTAAGGCGATGAGAATCTGTGAATTTGTTTTTTTTTTTTTTTTTTTTCCCCACTTCATTTAATTCCTAATAGCCTGACGTAACACTGCAGTGTCACGTTACGGGCGGTGCAGGCCAGAATATTTATATCTGAGGAAGAAATCTAAATAATTAACATTTCATTTTAAAAGCCAGTGGATAAATTCAAATTGATACTAAAGATCAAGCATTTTTACAGTAATCCCAAACTAAGGGTATATAAACCAGCCTGACAGCATCCTTTTATTGGGTCGCACATGAGGAGAAACATTTCTAAGACAATTATTTTCTAATAGTATATTAGAATCCCATTCTAACATGCTATTTAGAGTCCTTGATAATGGCAGGGTAGCAAAATAGATAAGTCTTCATCATTAAGGGTATCTTCAAAAAGTACAGTATGGTAGCAGCTAGGGAGGCATAGAAGTTAAAGTTGTTAGGAATCTCAGACCTCCACTTGTTAGAATTGTAGGCTTTGATTCTGGGAACACTGGCTCATGTGCCTAACAGTTCTCGTGAGTGATTTCTCCAAAGTTTTTGCAGGACTGAACCTATAAATAGTGCTTCTTGCTTTTTTAAATTAAGATGCAAATGACTAGATTATTTTCTGCCAAGCCACTTTTAAGGCAAAACAGGTGTTGAATACTGCTAGATAGCCTGCAGGACCGTGACATAGACAGGCAGCAGGCAGAAAGACAAGCAAAAGATAGAAGTAGCACTGGCAATGCAACTGTACGCTCTCAGCAAAGGTTTTGTTCAAATCTGTGAATGGCAACACTGGTTCCTTCCATCCTAAGCTTGTTTAAAAACTTGCAGTGTTTAATAGGCATATAAGATGACTGGTAAAAAAGCTATGCAAAGTGCTTTTGGAACATACCATGCCTGCTACTGTTATCAGATGAGAAGATCTCAGATTGGTATCTCTGAGCCTGTATCATGAATCATTTTGAGTTTTAAGGGTGTATTGGTAACAGAAATAATCTTTTCCCTGGGATGAATGTTTATAGAGAAGGAAGAATAATGTGAAGTAGTTGATTGCATCTACTCCAGAGGTGATAGAATCTATGTCTATCTTTTTGAACTTGTATTTGGAAATTGTTAAGCATTTAAATGTTTGAGGCTATGGACATTTAACTGACAAGTGTCAATAATTTGTACTGAAAGAAAAGAGATCTCACTGTGGCTTTTCACTTTTCACAAGTCATCTCCTGTGTGATGGCCATAAATTTAAGCTTGCATTTAGCTGGAAGTCAGCTACAGATAAGCTTGCCCTTTAAATTCTCTCTCACCAACTCTAATTTGGGGTTGCTCTTAGGAGATGGCAATAGTGTAAAGTAATACTAGCAAAAATAAGTCATAACTGAAAGCAAATATATATATATATATATATATAGTACAGAGGGCTTTCTTACTCTGAATTCTGTTAGTAAGATCTTTATCATTTGTAGTGATTTGCCATCTTCTTCAGATACCATAAATGTTTTTGTTTTTAAGGCTAAATCTAAGTGAATTCTCTTCTCTATCTACTGCTGAAGTACATTATTCACTCTTTCAAGGAGTGCAGAGATTGATTCTATATGGTCATCTCCAGTAGTTGGGACCAGATTTTAAAAGGAATACAGTTCTCACTTAAGAGAGAACTCTCACTTATCTTTTCTTTGAAAGACTACTGAGAATTTAGAAAAGCCTCAAACGTGTGGGTGAAAACCTTGCTAAAAACTTAGCAGTTAATACTAGTTCTGAAACAGGAGCCAAACTGAGAAAGGTAAAGCAAGGAAGTCTGTTCCAGTTGTGGGCAGTGAAAATTCCAGTTGTATCAGAGTGGGAGATGATACCAGACAAAAGTGAATCTTTCTAGTGCTGGCAGCCAAACAGAAAATCTGTAGTAAGCTCTCCACCTTGGGAATGTGGCATTCAGCATGAAGGATTAGCCTCACACGGAAGGCAGCATTCCTGGCCTCAACTGCAGCCTTGAGTGTTTTACTGTGTGAAAGGATATCTCTGAAAAGGTTCCAAAAATTCACGTATAGGGAGAGGCAAGCCTCTTAATCCTGTCCCCAGAACGAGTGGCATAAATGTTAACTTTCCTTTACTGGATGTGTGTTTTCTTTGCCATTTCTAGAACAAATTGTATTTATGCAATGAAAACAAGCATAGAATCAGACTTAAAGGTAAAAAGGAAGACTCGATTTACTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGTACATATTCAGGAGACAGTGCTGAGCTTCTTATCAATGGACATCAACTGCTGTACTCAAGCCAAGTGGTTTGAATCATCTTTGCTATGCCTGCAAGTGCTACAGCACATCTGCACTCTCACCTGTTTACTCATGCATAACTTGTTGTGTATACACCAATTGCCTGTGAGTTTATCTTACTGAGAGCAAATGTGAGTGCCATGCTGGAGACAGAATAGCAAGAATACAGGCTGTGATACATGGGAGAGCTGCAACCTACAGAGTTACCAGAAGGACTCCCAGCTGTGATACTCGGATACATTTCCTGCTGAAGTTGTGCTAGCTGCTCCACCCGACGCATTTGGGCCAGTCTCCTACCCAAGCCTATTGAGAAAGGAACGTGGTAGCTTAAGACAGCTGTATGTTTTAAGGTAATGGTTTAACTGTGAGGAAGGTTTAAGCCTGTGTATGTCAGCTTTAGAAGGGCAGGAGTGTGGCCCAGCTGACAAGTGGTAACTCATTAAGCCATAGTAATGCAGTGCCTGTGATTCATCATCCATCCATAAAGATGCACCTGGAAACTGAACCACGTTAGCTAGATTTGCTTTTGCAAAGTGTGGAGTAATTCCTTTTCATGTCCCACTGCCTGACTTAGGGGTATCCAGCACAACTGTGCTTAGTGCTGCTCAGTCACGCAGAAGTCAGCATAACTCAGCTGTCCTTTTGACAGCATGCAGGAAAAAGTCAAAATCTGAACCCTCCTTTAATTTATACTCTAAAACATCTTCTGTCTCCTGTGAATAAATTATACCAATCAGGACTTCTATGTGTGCTTCCTTACGTGTACATCTGATATCTGTAGCTAGTAAAAAAAAAAAAGGCTTTCTTGCATTTTTATGTTACTGTTATGCACATGGCAAAACTGTAAAGCAGAGCAAAAGTGAGGGTAGAAGGAGTTTCTTTTGGAGTTCTTTCACAGTAAATGACTTTGAATTTCCATTCAAAAGGCATTCCATGGCAAAACTTTTTTGGTGAGAACAGATATTGGCAGGTATGGACAGTACATTCATAATTGCTTTTGTGTTGCAAGGCAGCTGCATCTGTGGTACTGCGTTGTCCTAACCCAGAACCCATTTAAAGTATACAGATGGATAGGGGAAAACCAAGTGGGATATGTATCATTGCACGCATCTTGCACAAACGTACTTTTCTCACATGCTAGCTGAAAAAAACCCATGCCTTCACACAGCTGTGAATCTACACATACATATTAGGCTCTGGAACCTGGTTAGCATATCAGGAGACTAAAATATGGGAAGGTAGAGGCACTGATTTCTGAGGTGAAATTTCTGATAGTGGCCTTTTGGTATCTAAAGGAGAGCTACAGGAAAGAAGGGGACAGACTCTTTATAGCTGCGTCTGTGAGAGTAAGAAGAGATGGCTTCAAGCTTGAAGAGGGTAGATTTGGGTTGGATGTAAGGAAAAAGTCTTTCACAATGAGAATGGTGAGGCACTGGAACAGGTTGCTCAGAGATGCAGTTGATGCCCTGTCCCTGGAGACTTTCATGGTGAGACTGGATCAGGCCCTGGGCAGCCTGATCTAGCTGTGGTGTCCCTACTCATTGCAGGGGAGTTGGGCTAGATGGCCTTTAAAGATCCCTTCCAACTTAAGGTTTCTGTGATACAGTTAAAATACATAGAATCCAGTTAAGGATTCTATGATATATGTGAGAAGTAATGTGATGCTTTCTATTCTTCACAATGAAAGTGGAAGTTCTCCTTCCAGCAAGCCATGCTAGGGGCTACTTTAAACTTATTTGTTGTTGTAGACATTTTTGCCACTGATCTATCGGGGCTCCTTGAAAGGCGTCCTTAGAACTAGTGGTCTACCTGCCTCACTATAGCTGGCTTGCAAAAAGCTCTGTTGTTCTTTTAAAGCTATTAAAATGATTTCCAAATGTGTGTGCCTGTCATGAACAAAATACACCTGCTTTGTACTTGGCTGCATGCCTGTTTGTAATTCATTTGTATGCTAGTTACGTGTAGTCAAGCAACACCAAAGATGTAGGCTGCTTTTTGCTTCATAATTTCACTTGCAATTTAACAGCCCAGAACTAAACCTCTTTCATTAAAGAAGAGCTGGCAGAAAGAGATACCACTAATTTAACGTAGATTATAAAAATTGAGCAAAATTTCTTAAGAGAAGCAATAGCAAACTGCTTGAATTCTCACTCTAGATTACGGTTTGGACAACTCCTTTGCTAGAGGCAATAGCAAGTGTGGTTTTGCTGCATTCCCATGTACAAAATACAAGTTTGAATCTACAGCTTCTGTAAACTGCTGCTGGCCTACTGTCAGATCCTCTGTTGGCAGGAGTCTGCATGGTTGGTGAAATCAACAGGGCTAAGTCTGAGATTTTATCTAGGGAGCAGAAAGCTTTGTCCAAAATGTTTAACAGGAATAGAGTTTCATTGAAAATGAATTTAACAATCTTTGTTGTTATTTGATTACTTGTTTCAATTCTGAATTCTCCTTAAACATTAACAAAATCAATAAAGTCTATCTTGAGAAGGGATTGTGAAGATGAGTGCACTCTTTTAGAGTGTCCGTCTATTGCAGTTCAGTCTGGTGATCTCCCTGTGCTGAGATCTGACTGTTCTATCTATGGAAGAAAATCAGAGTAAGTCAGCAAAGGCTTTTATTTTTTTCCTATCACCTTACAATAAATCCACAACAACTATCATTAGAAGCTTAGGCACAGACCAGTCAAGAAGCTAAACAGTAATCCATTAGTAAAAGTAGAAGTCAAGCAATCAGTTTACACCTCATTTAAGCATTGCGCCAAGAAAAAAAAGTCAACTGGAAGATGTCAGATTAGCACTAAGATTTAGTCCAACCTAGTAAAATGCATGCTATTGCAGGAGGTTCTTAGGTGACCTGCAGTAAAGGGGTGGGGGGGGGGAGCTTGTGCAAGCTGAAACGGCAGATGCAGACATAACCAAATGCTTTGCTGGAAACTGTGCATGCTGCTGCCTTTACAAGTGCTGTGGAGATATACAAGTGCTATACTGTATATGCTGCTGCTTCCATCTTAATGTGTATCTACGCTGTTTGATTTATTTACAGAGGATGCATGGTGGTGGGTTGGGAAGAGGTGGTTGTGCTCTCATTGATGCCTAGATGATTTTGTGTAACCAACAGTAATGCTGATGGGAGTTCACCCACGTAAATCATGTCATACATCAATGGGAGAAGAGGCTGTGTGTCTTAGAACTTGTGTTTATTGCGCATCACGATGCTTTAAGTGGAAATGGCAATTCTGTATAGTCTGAGATGCACAAATCTGTAGTGAAATAAAACCATAATTTAGTCAGTAATGAGCCTTGACAGCACTGGCTTCCACGAGGTTGGCCCCCTGGCAGAGACATCATTAACATCAGCAAGAGTTCTGTTACTGATTTGTGTTCTGTTACTAAATTTGTGGTTGTAACAACACAGTCTATATTAATGCATTGCGTCAGCAGCGTTTAATGAATATTGACGTGCAGTGGATCTTATGAAATGACCAATAATTTTGTGCATCTTTAAATGTCTTTTCTGTGTCAGATACCTATACAGAATTGCAATACTGTGTTAATTTTGCTATGCAATTAAAAACATGAGGTTTTGCTATTTTTATTCACTTACAGATGTAGGGATTTTTTCATTTTAGAACCCTTATGGTTCTAAAGCAGTTATGATTTTGCTATATTAAAGATACAGTATCCTTTTCCACTCTTCCCTTGCATCTCTTCTGCATAGAATAACAGTTTTGCAGTCCACTTTGTGCCCAGGAAATGTCACCTGTTGTATGTTTTGACCGTATTGTCAATTGGAATATGGAGCTTCCTTCAAAGCCCAACAACAGCCCAGCAACCTCCCTCCATTAAGGGCTTGCTGGCTAAAACAGATTTAAATCGATAAAAGTGACAATCAGAGCAAACCCTTCAATGTTGGTCATGTATTACTTAAAGTACAAAGAGCTACTGCTGTTAAGTCCCCACCTTTTATAACAAGGTTATGTAGCCTAACAAGCTGTGCGTCTAATATTCATTTTTATTGGCAAATAAATCATTTTAACATGAACCTGAAACATGGATCTGCTTCCATCTTATTTAACTGTTGTATTATATTTAGTTTCATATGGTAGTAAGAGCTGAAAAGGTCTCTGAGCGTTAACTTCAGTTCAGACGATCAAAATTTAAAGATCATGAAAAGGAGCAGTAAATCTATGTGCCAGTGTATGCATTGGTTGCAGATGTTCAGGTGCTTTAAAATGAGAGTAACACTAATTACTCTCAAATTAACATCCTGATGCAAACCCTTTATGTTTATTTTGTTATGCAGCACGACTGATACATACGTATCTATTTAAATGAAAGGATACTGTCTCTTTAAGAAAAGCATTTGTGTTCTGTTGATGGAAACCTGGAATCTTAAACCACGATACACGAGAATTTGTACAATATTGTATGGTCAAGTAGCTCCTTAGTTGGTTGAATAAGGATAGCATCACGTCATGATATTTAATTACTCTTATGTATCAGAACATGTTTGTTAACTCTCATAATGCAATGCAGATGTAAGGTGTTTCTATTTTTAAATGTGTACCAGAATTTATTTTTTATTTCAGAAAAGCTCTGAATGTTGAATGTGTGTAAGTCTCCAGGAATGTAACAAGTTGATAAAAGCCCCAGCCAAGTCCGTCCTCCTTACAGGGGAGGAGAAAAAAAAAAAAAAAAAGCTGGAATTTCTTTTTTCTTTTTTTTTTTCTTTTTGGATATTTGTTTTACAG
Seq C2 exon
CTTTCTACGTCTTAAGGCAGAGAATAGCCAGCCTAAGGTGCCAGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566:ENSGALT00000017193:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]