GgaINT0070515 @ galGal3
Intron Retention
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8757501-8759122:-
Coord C1 exon
chr4:8759044-8759122
Coord A exon
chr4:8758032-8759043
Coord C2 exon
chr4:8757501-8758031
Length
1012 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAC
5' ss Score
4.93
3' ss Seq
CATTCCTAATTGTCCCGTAGTGG
3' ss Score
6.14
Exon sequences
Seq C1 exon
ATGGATCCGGGTGGTGGAAGTCTTGGATTGCAAACACAAGAATCCAAAATGCCTCACGCCATGATTATGCAGGACTTCG
Seq A exon
GTAAACATTTTATCTGTTAACAATAAAGTCATGACTGTCTTTAGGTTTGCTACATGTTTGCAAGTGATTTCAAGATGTAAAGTTGACTAATACAACAATGATGTTTGCATGGCTTTTTGGAGAAATTTCAGAATACAAGATGATGTATAATGAGGCTTCGTATACTTTGGTCACTCATCTCGAAATAGTCACCTATCCCAAAAAATTGAGGAAACTTCACAAAAAAAAGCAACCCAGCCATCTGTGGTTCAGAGTGCTCTGGATGGGACAGATGTTGTATGGAGTTCAGTGCTTTTGTAGTGTGTGCCTCTGTTTGAAATACCACTGGCCAGCTGTTACATCTGCATGCTGGTACAGCTACAGCTGAGCTTTTATTGGTTGCTTTGATTACTGTCTTCGGTTCTCACTTAGGAGGTGTAAATGAGGTGGACAGTAAAGTCTTTCTGTGTCAACAAGTAACTTTCTAGGTAGGCAACAATTTACAGATGTAACTGAATCTGTAATTAGTTAATGTCTTTCACAAAGTAATTGCATTTGCAGTACAGTGTTGAATAATTCTACTATTTTTTTCACTCTGATAAGTGAATGTTTTATTCATTACAGTCAATTCTGCTATTTCAGGGTGCATTACAATAATTCACTTTTTTTTTTTTAATAGAAAAGTAGCTTTCAAATATGACTGACCAGCTTTCTGCTTCTAGCTATTGATTGTAGTGTGGCAAGTTGTTGGAACTTGTGCTATAAATATGGCATATGGTAGAATACTTACTTTTATCAAGGCCCCTGCAGTCTGAAGAGTTGGAGTCCTGTTGTTGTGTCACCAGTGAATGCATTGTTAGCACATGGACTACTTTGAACAGTCTTTTCTGGTGAAGTGCAAAGTGTAGATTGTTGAAAAATAACAGATTTACATCTGTGTTTACCTCACCTACGCAATTATTCTGTTCCTTGGATAAACACTGCTAATGCAATAATTTTAACCTTTTTCTCCTCATTCCTAATTGTCCCGTAG
Seq C2 exon
TGGCTGGAATGGCCGGCACTGCTCATATTGATGGAGATCATATTGTTGTGTCGGTCCCTGAAGCTGTCCTTGTTTCTGATGTTGTTACTGATGATGGAATAACTCTTGACCATGGCTTAGCAGCTGAAGTTGTGCAAGGACCTGACATCATCACTGAAACTGATGTTGTAACAGAGGGTGTCATTGTTCCTGATTCTGTTCTGGAAACTGATGTGGCTATTGAAGAAGCACTAGATACCAGTGATCATGTTCTGACTTCTGATCTAATAACAGAAGCTGTTAGAGTTCCTGATCAGGTGTTTGTGGCTGACCTTGTTACGGGTCCTGATGGACATTTAGAGCACGTGGTGCAAGACTCCGTGTCAGCAGCTGACTCACCTACAATGGTCTCGGAAGAAGTCCTTGTAACGAACTCAGATTCTGAAGCAGTCGTTCAGGCAGCTGGTACTGTTCCTGGCTCTACAGTGACTATAAAAACAGAAGATGATGATGACGGCAAGAGTACATCTGAAGACTACTTAATGATATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF047048=Zfx_Zfy_act=PU(56.7=78.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAAATGCCTCACGCCAT
R:
AAGGTCAGCCACAAACACCTG
Band lengths:
352-1364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]