GgaINT0071079 @ galGal3
Intron Retention
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47305540-47315595:-
Coord C1 exon
chr4:47315032-47315595
Coord A exon
chr4:47305636-47315031
Coord C2 exon
chr4:47305540-47305635
Length
9396 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ACCCTGATTTCAACTTTCAGAGC
3' ss Score
9.28
Exon sequences
Seq C1 exon
GAAAAGCCTCAGTGGTTGATGCACGTGACGAACACAAGACTAATTTCTCTCAACAGACAATGCTTAACAAAGGGCTTAGCAAGTCGATGGGATTTCTGGCCATGAGAGGAACACAAGGCGAAGAGGAATTTTTCCAGGGCATTTCTTCAGATTACAACTCAGGACAGGAAGATTCTTTCTATCCTTACAGATGTAAAACCAATGAGTTTGAAAACAAAGGTCACCTCCATACAGATGCAGCTCCCAAGCGGAAGGTATGGGCTTCCTCCACAGACTTGCTTTGCACGACCAACAGAGCAACTGAAAGGGACCATGCTTCAGACTCTCACAGGCACAGTCATCAATGTGAGACCTTCGCGGTACGGACTTCTACTATGACCAGAAACAAAGAGGCTAGATACTCCGATGGGAGCATAGCACTGGATATCTTTGGACCTCAGAAAGTGGACCAAACGTGCCACGTGCCTGAGACATCAACTTCTGCAGCAATATCGAGTGCCTTTGACAGGATAAGGGAGAGACAGAAGAAGTTGCAGCTCCTGAGGGAAGCCATGAGTGTAGAAG
Seq A exon
GTTAGTGAAGCTTTTGGATGTTCTGAATTATTCCAGTCACTAAACAGAGATTTCTCTTTATGATAAATTTGAGTTCTCTCATAGTGGCTCTTGAAACTACTGAGTGTACCCTGTAGTACACTCAGGGTACACTCAGGCCAATACCCTGGCCTTCTATTTTTAAGTGAAATCAAAGTATTAGAACATTTGTTGCCAACAAAAATGAAAGTGCTTGTGCAGATTACTTTCTTAGTAAAGATAGTTGTTCTCTTTAAGCCAGCTAGTATCAAGTGAAATTAGGAAAAAATAACAATATTGGCAACAGTAGTTTCCCTTCAAGGAAAATATTCCTCTCCAGCTATTAGGAATGGATTTATAACCCAGAGAAAAAGAAGTGCGTCACCTGGAAATCTCAGGTTTTGCTCTGTATAATTCTGGATGATCTAGTGGAGCCTATAAATATGTAATTTCTTTTGGGCTTATGTTAAGATCTTTACCTCAGTGAGAATAATTATCAACAAGTTCCCCTGGTTAATTTAGAGAACATGGGGAGAGAAAAAAAACTTTTGTGGAAACTTCTGCAAACATCTTTATGTGGAGCCATATAATGAGATACTGTGTATTTTGTTTGTTTTGAATGTGTGATTTGATTTTCAGGGGTTATAAGTATAGTTCAGCTGAACTGGAACTGAGAGCCAAGTCAGAACCTGTTCATGATGGGCCAGAAGGTATAACTCATTAATTTAAGGTATAAGCTGGAAAAGCTGTGTGTACAGAGCTAGTTGAGTGTTTTATTCTAATGTGTACAAAGTCCACGCAATTGAAAACTCACCTGGCTTTCTTATGACAGAAATAACAACGATGTGATATAATTTCTGTCTCATTGTTCTGCTCTGAGTTGTAAGGACCTCCTCAGGAACATCACTATTAAGCAGAAATGATGAAGCCTTTTATCAGAGTTGAAGTTGTCAAAATCACTCCCGGGGCCATTCCAGGAGAAGCCTATATTGCAGGTTGCATGGGAAGTTAATTCTTTCTCTCCTATGCACATGAGCCTTGTGCTTCAGAGAGAAGGAGCAGCACTGACAAGGCATAGGCAGTTTAAAAACCTGCTGTGATTGCTGTAACGATTGTGCAGAAAGGACACATGGAGATTTTTTGTGTCCTCATGTTAACATCTTTCAATGAGGGTTACATTATCAAGTGAAGGAATGAATGTAGATGGAAATAGTGCTGTAGAGATAACCATTGTTTGTTCAGAATAGGACTTCAGCATCTGTAATTATCTGCTGAGATGTCTGATGAGGCAAAGGGGATGTTTGTGTTTTTGGTTCAAGAGTGTGGAATTGAAAGGGACCCTATCAAGTGTGTGAGTCACCTCAGATGTTTAGAGATAGGCACCTCGCAGAGTGCAAGAGGAGGCCACTCCCTGCATTAGGAAAGATAACTAGCTTTGTTGGTCAGGAGTTCAGCTTTCTTCAGGTTGATGTTGCACAACAGCAAAACCAAAAGCTCGGCCAAACCCCATGATGAGTAAGGCTTTCTCACTCTCAGTCAAACAGATTGGTAGATGGCAGAGAATGTAATGTGCCTCCTGTGCCTTGCCATCCCAGATGGGTCAGATGTGTGAAACTGTGCAGTTCATCCGAGGAATGGGTGAGCAAACCAGGAACTGGGGCTCTGCAGTCAGGCGAGCTGAGTGACAAATCTGTATAGGGCAGATGGAAGCAGTTGCACTGAGTCATTGCCCATCCTTAGGAATTCACAGTCATTGCTTGCTAGAAAAAAGTCTTACTTTCTCAACAGATACCTGGGCTGCAGTATTGTTCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTGCAGTATTGTTTCCTGCTCTTGATAGAGAAAGAAGGTACCTTTCACTCTTGTTTTGTAGTTAGAGTTCCGTGTTCTGCTGCTTTATTTTAGGTTTTCCATTTTTCACTACTTAGAAGTTGGGAGCCAATATCTGACTGTGAATGTGATATTTTAATTAGAGCCAATTTGAAGAGGTGTTTTAGGACAATGAATAGGGAATGGTTTTTCACATAGGAGTTAGAATCATAGAATCACAGAATGGCTTGGGTTGAAAGGCTAATACAGCACCACCTCAGATGGTAGACGTTGGGAAGAAGGAAGAACGAGAAGGAGAACAGATGTTCCAACGGATTGGTTGTCGGCAGCGAGGGTTCTGCTCCAGCATGGAATTGTGGAACAGGCAAGGAGCCATGGGAGCCAGGCTGGGGCTGGGCTCAGCAGTGCAGAGGTTACATCCCTGTTTGGTGATGTAGTTGGGCTGTTTGCAGTCCAGCTGAACTCAGGTCAAGGTTGCACATTAGGTGTGAGTAAGGCCTGCCTGCAGCTGTAACTTGTTTTTCAGTTTCTGAACTGTGAAATGGCATTGGACTTAGCAGGCAAAGCTTGGCCAGATATAAGCTCCCTCTTCAATCTACACAGGAATTTAAGTGACACGTAGCTTAATTCTCCCTTAACTTATTTTGGGTCGAGCTGGCAAGCTGTTTTGTTATTCACAAGGTCTTGAGGAGCTGGCTGTCTTTGAAAAAGAGAATGTTCTCATGCTCAGGCCTCGGTACACCAAGCTTGCACTCAGAGGAGATTTTACAACCCAAATTATAAACTCACGAAAAGTGGTGTTTATAGTGGAAAGAATGACAGAGCTTTAATTACAGCTGTGCTGTAGTGGGATTGTTTGTAGTGAGCTACTGAACATCCATACTGCACTGTAATCTGCAGCTGGGACTCCTCGGGTGCTGACCAACTGCTGTCTTTGTGTTCTTCTTTTGCATTGTGTTTATCTGCTGTATGCTAAGGAAAGTTTGGGACTTTGCTCAGGTGCCAGAGGGAGGGAGGGGGAAGAGCAGAGGACTGCTGTTTAGTTTAAGGATACGGCGGCCAATTCTGAACGCTCAGGGCAGACTCCAAAATGTGCTTTAATCATGCCAAGAAATGGAAGAATAAGTGCTGTGTCTCAGCTGTGATTGTTCATTCCTATTTTTGTAACAGAGTTGTGGTGAGCGTAGTTAAAACCAAGCAATTATTGGTACCAAATGAGCTGATTCTGTTGCTCTCTTAAACCCTGGCAGTTTCTGCTTGGCACCCTTGGCAACATTTCTGCTCAGAGAGAAAATATGTTCTGCCTTTTACATGACGGAACAGAGAGCAAGGATTGCCATGTCCTGGTGCAGGGGCACATGGGCTGGTTTGAGAGCAGTGCTGCAGGGTTGGCTGTGCAGCAAATAGCAGACAAGAGGAGGAATAGGGGAGGATACCAAAAACTGGATCTTGATGAAGCTTTGGAATGTGACTACAGGGGTGAGGGTGTGGGGGTGGTTTGGGAATATTTCCAAGACTTTGTTAAAAGGTTTTACAGTTGGAGCCATGTGAGTTCCAGAGCCTCAGCTTGGTTTTATCCCTCTCTTTAACTTTGATTTCTCCTACTGAAAGGCTGGACGATGAGGTCTTCATTTTTCCTTCACTTACTGTTGTTTTCTCCATGGAGTCAACAAGAGCAGACAGTAGTGTTCTGTGCCTCCAGAGATCAGCCTTTGCCTCTCAGCTGTATTTATCTCACCAAGTGTTAATTCCTGTGCAGACTCATCCGGACCCCATTTATAAAGCTTCCATGTCATGGCTGTTGCGTTTGGGTTGGGAGTGATGAGTGGATGTCTGGGGATACTCCACATGTTCCAGATTTTAAAGACTCCCATAGTTTGAAGCTGCATTTGTGAATGAGGAAAGATGTGTGCAGGAAAGCAGACAGTGCATGCAGATGGCAGACTGGAATCAGGGAGCTGCTGGTGAAGTGAGAGATGGGATTTAGCACAGAAGAGGAACAGCTTCCCTACAAACTCTGTGAATCCAGTGAAATGCACACTTCTTTCAGTTGGATTGTATTTATTCAATTATTCTGTAGGCGAAGCAGGGGAAATGCAAGTCACCCACAGCAATGTACACAGTGTGCATGTGGAAGCAAACGGAGGCTCAGCTGACACATATCTTACCATCACCGTGCTGTAGGATGATTTAAGTGCAGTGGTGGTGCAGTGAGTTTGTCATGTGGTTGGTATGTCCGGTGTGGACTGAGTTCAGCTAGAACAGTGTTCACAAATCATGGTTGTGAAGCTGAAGGGTGGGATAATGAACTGCTTTTACCTAAGGAAAACTTCAATTATGAATTATACTGAGCCTAAGGAAGCTGGGTTTTCATGGAAGAAAATTTGTATGACAATCTAAAATACAAGTGCTCTGGCATCTGCTAGCACTGTTTTGTTCTGAACTACATGGTTTATCATGAGGTATAAAACAGACCTTGTAATCCCATCACTGCCCTGCAGAGTGGCAGGTGCTATCTGCTGTCACATCTGCAGCAGCTCGCGCTGTCTGGGAACAGGTTTGGGATTATCTCAGTCTAACAAAACATTTGAAAACAAACAAAAACCAAAGCAGACTGTGTTTGTCATACTTTCAGCCAGTGTTTGTGTGTGTGTGTCTGTGTGTGTGCATGCCTCTTCCTGGATGGTGTGATCAAGATTCAGAAATGAATGGTGGGAGGCTCCAGGTTCTTGCAGCCCTTCACCCTTCCAGCCCTTGGAGATGTGTGTGTTGGTCAACAAGGGTTGAGGCTGCTCCCCTGGAGGGACAGATTTCTTCCCATGGCTGTTAGTCTGGATGGATCTTCACTAGGAATCCAGACTGGGTCTCCATGCTCTTCCCACTACACCTGTGCTGTTCTGCCCTGCGTAAGGTCATTGAGGCTTGATTAGATGGAAAGAGGAAAAAGAAGGGTGAACATGACTCCACCCTATTTACTAAACCTTTGTGAGGGAAGAACATCCCAGGCCCTCCTCAAAGGACTGTTAATGTGTTTTAAATGATATTATAATGAAACTCTCTGCTAACAAAGATGCATACTACTAAAACCCACAGACCAGACGAACACCCTTTCACAAAACTTCTCCTTTAACTCTGCCATCATCTCAGTCCTTTTCCTTCTCTGTACAACCAGTCATAATTTTGCAATAGCATGTATTTGAAAACCAGTGTATCTAATGTGAGTCATGTGCTTGGGATAATGGCATTCCAAGTTGAGTGCGGTTCTGATTTCTGTTGCAGTTGGCTGGGAGACGCTTTCTGTAATGACGTGTCTGGGCTCGCATGCCTTGCCCTGCACAAATACTGCCTTTTGTTATTTTGTGCTACAAGAGGTGCCTGTGGGGTTGTGCTCTGCTGCCTTCCATAGGGAGGTGGAAAAAGTACCACTGCAGCACTGAGCAGCACAGCCTGGGTTCTTTGCTCGTCCTGCATTGGGTGGTAGCTGGTGTTAGTTTCGGTTGTACCAGAGGTTTTATATGGATGTTGTAGTCATGGATTCTTAGAACACACTGAGATTCAGAGGGAGTTCTTGTGTTTGTTTCATTGTTTTTTCTTTCCACTAAGGTATGAAATGACCTAGGGTGTTCTGGTAAGAGACTATCATCTAACTGTGTAATGTATAGGAAAATACTACTGGTAGAATAAGTTTTGCTACAGTGTGCTTGATGTTTCTAGGACATAATCGATCCTACGCTCTCTCCTTAGTCACCAAATATAAAACAACAGGGTTGTTAAAAAAAATCCCGGGGAAAGCTGTGGACTGTGGAGAGAAGTTCTTTATTGCCTTCATTAGCTATTGTGGATTTCATCTTTCACCGTCCCACCAAATGGGCTGGAAGCTCACCCTTGTTTTTGTAACTATTGCATGAAGAGCTGAACTTTACCTCGATCCCAGAGTCAGGACTCATGACCTGTGGAAGCCAGCCCTTATTTAGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTCATGACCTGTGTTTCCCAGCCCTTATTTAGAAGGAGTTTGGTTTGGCCATGATCCACGTGTCTTCTCTGAAGTTAAATCTCACTGTCATGTGTTAGAATTGAAGAGAATGTGCTGAAGAAAGAAGGCAGCATGAGTTATTCGGTGATTTTTTCCTAGCACAGTAGATGTAGTAACCTCAGTATTGAATCTAGTGCTTTCAGGTCTGCCCTGCATATCCTGTCTGTGCCTCTGGCAAAGATCTCACGTGGTCAGGATGTGTGCATGTATCACACCAACAGCTGAGAGCTGGGAGCTGCTGCCAATGAGAGGATGCCCCACAGCAATCAGGTCAGGACTCCGCACACTCCTTGGCTTGGGAGTTCAGCTCTGGGCTCCTGATTTAAAGTTTTACATGGATTTTGTGCAGAACGCCATGTCTCAAAGGAGTGGGCTGGAGGCACAGTTTGTGTGTCTTTCAGGAAGCCCAGCTGCTGACTGGGTGGAAAAAAGATCTGCTCAAAATCTCATGTTGCACTTTATTGTGCCCTTCCTTTCCTCTTGCTTCAAAGCCAGCCAGCAGACTTGCAAAATCAGCAGTCAATAAAACTGCTGGGAAAGAGGAGATCTGTTTTCATTTAAGCGTTTCTGCACTGTAGCTGCCATGTTGTGGTAGGGTGGATGCTTCATTTGAAGGGGTGGGAGCATTGTAACAATACACAGCAAAAGGCTCCCTACCAAATTTGGCCTATGTTTCCCTATTTAGTCAAATAATGGCTAGGTTGATGGTGAATTTCTTTGCATTAAAATCCAGGGTGCTGAAGTAGCAGTTGTGAAAGGGAAGGGGATTTTAAAGCTGGGCTTGCAAGGTAGGGTGCTTGCCCTGCTGAAGAAAAAGCTGTTCCTAGTACCCTAGTACAAGGTATCTTAGCTTGCCAGTTGAGCTCAATTTCTCCCTTTCCAAACAGCAGATAACTGCTTTTCCATAAGAACATTTTTGATACTGGAGGTTTTTGCCCATTTCCCTCATTTCTTTTTTTTTCCTTTTCCTTTTTTTTTTTCCCCAACTGCTTCATGTCATCCCTAGAAGAAGTAAAGTTGTTCATTTTCACCATTATTTGTGGGTTCTTTGTTAGTTTCACGTGGTTTGGTTTTGCTGCTCCATTCTAGAAGGGGGAAGCAAAACTAACTGAACTTGTGTTAGAAAAGAGCTCTGTTTTCTGCTTGTGTTCTCAACCGCCCTGGGTAAAACAGAACAGGTGCTTTCCTTATTTCTGTATGATAACCTCATTATTAGTAATTCTCTCTCAGAAGATGTATTGCTGGGTTAATAACACGTCTTTCAGCTGTCCTCTGCAGTAACTTCAAGTCTGCTGCTCCTGCCTGCCCCGTTGCTCAGCATTTTGTGTTCCAACCTTTCCATTCTTTCCTGCCATGTTTTGCATTTGTATCTACAGCTGTTAGAATGTTACCTGTGTGTGGGCCAAAGGCCTTCTGGACAACTGAAGTGATGTCCTGAAGTGGTGAACAATGGGGGCTTTTTTATTTGTTTCCTGCTTAGAAACACTCTATGTGGTTGCTCATTGACCTGCATGCGAGAATGTCTTGGGAGGTTGTTGCAAATACCGTGGATGGATCCTTTCCACTGTCTCCTTTGCTTCAGTATGTTGAAGAATCCACTGATGGGAGCAGTTGAGGCTGTGTTGTTCTGATTTCTCTTCAAATGCAGTGTTTGTTCTGGTTCTATAGACGTCCTGGAGAGACTCATTAATTGGTTAAGATTTTTTCTGTGGGTGTCAAACGTGAATGAATTATAATTTTCCAGTTCCTACTTTCTTGCTGTGAGGGTTTTTCCTTTTTCATAGAGAAGGAACCAGGGGCTGGGCCGTGGTTCCACACATGAGAGGTGTGCACAGACATGGAGATCACTTTGGGGTTGGGTGGTAGAGGTTGGTTTTGTTCTGCCTTTTGGTTGTTTCTCTTCAGGAGTGATTCTGAGAGGGAGTTATGAGGGTGGATCTTCCCAAGCAGCCAGGAGAGGGGTTGCTGGCCCAGAACCCTGGCCTGTGGACGCAGCCCTATGGATTCACTTAGTGTGTCCTTGGCTTCCATGTTCCCGAAGCACAGAGAGGCATTTAAAATACTGAGAACAAAACACATTTCCTTGCCCTGTGTTTGATTCTACACTAGCACCGTTGTTCTCTTACTATTCTGATACCCTGATTTCAACTTTCAG
Seq C2 exon
AGCCTCTGAGAAGGTACAAATCATACCACAGCGATGTTTACAGTACTTCGAGTGAAAGTCCATCCATTATTTCTTCAGAAGCAGATTTCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078:ENSGALT00000018046:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]