GgaINT0072175 @ galGal4
Intron Retention
Gene
ENSGALG00000029157 | MBNL3
Description
muscleblind-like 3 isoform 5 [Source:RefSeq peptide;Acc:NP_001156813]
Coordinates
chr4:3478547-3480106:-
Coord C1 exon
chr4:3480012-3480106
Coord A exon
chr4:3478621-3480011
Coord C2 exon
chr4:3478547-3478620
Length
1391 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
CTTTGTTTTCTTTGCTGTAGATA
3' ss Score
10.5
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
Seq A exon
GTTTGGCCCTTTCAATGGCTTTCTTTCACGTGTGTTCAGATCTCGAGGACCGGGCGAGGGCTCCCAGTCCCGCCCGGCTCGGTGCAGGCTCGGGCGCGCAGAGGCAGTGTGTGTCTGGGGATCGGTGAGGGGGCACCGGCTGGAACCGCTGCGGCGGGAGCGTAGGGATGGGCGACTGGCAGGGCACGGCCCCGCAGGTCTGGGTGCTTCGCTGCCTTCTCCAAAGTGCCCCGGAACTGAGAAATCCAGGCTGCGAAACTCCTCTGTTGCACTTAGACCTGCAGCACTTCTGCTTTCAGTCTCAAGCAGAAATACCACCCCGAGCATCTTTCCCCGTGGTATTTTGGCATGTCCTCTCCTGGCTGGAAAGTGGAAGTGGAAACACAAAGCGGCCTCCCCCCATATTGCGAAATTGGACTCTAAAATCGGCTCAAAAATAATAATGGAACGGGGTTGAGGCGATGAAGTCTGAAGCTTGTTTACACCAGTAACGTCACCCATCCCTACAGAAACGACTCTGGATGTGCAGTACGTGCCGTTGTAGCACTGCCATAAGTGTCCAGGACTTCATGCATGTCTGCCGAGCCATAATTCTCTCCAAAACTTTCCTCCGAAGATACTGAGTTGTGATGGCTGCTTCCGCACCCGTCCCGAACTGTTTACGCACAACCTGTCCTAGTGATGCTTCCTGATAATTTGGTGTGCCACAACTTTTTCCACTGAGGCCAGAGAAATGTCAAGTGCTTCCCCCCGACTGCCCAAAACAAGCTGTAGCTTTCCGAGTTCTTTGTCACGCTCAGGCTTAGAGCTATAGCAGAGAAAATGGGGTATCGCTTTATTCAGTAGGATGCTGTTAGCCATGCTGAATGTCAGTACTGTCTCAGGGGGTATCCTGCAGTCTTTTGCCAGCACGAGGTTATGAAGCTTTCAGGAGAGGTTTTACCCGTGTTAAGTCCTCGGCAGTGTTTCACTGCTTGCAGTAGGTATTGCTGTTCTTTCTCTGAGATGTGTTGTAGTTGGCAGGTAGAGAAGGTCTTACTCGTATTGGTCATGAGAAGAAAGCAGAAATTTCTGTGCAGTGTTGCTCTGTGGCTATATGAGTCTGGACAAAGCTATGCTCCTTATGTCTCAGCCAGCTAATTTCAGAGCATTTGTCTTACTTGTAGTCCGTGGAGCTAAAATCCCAGTACAGTCACCGCATAGTCCACGAGGCATCAGTAGTGATGCAACTATGTCGTACTTAATGTGTGGCAAAATAAAGGCAACTTGGGAGTGGATCCTGTTTTATAAGACACTGATGTATTTGCTAACCTGAAACTGAAGACAGAATGAAGAGACGGATCTCAAAGCAATGTTTTAATGTGTTGTGTTCTTTGTTTTCTTTGCTGTAG
Seq C2 exon
ATATCCCAGTTATCAGTAGATGAACTGAGTAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCCCGATAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157:ENSGALT00000045882:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]