RnoINT0090161 @ rn6
Intron Retention
Gene
ENSRNOG00000002487 | Mbnl3
Description
muscleblind-like splicing regulator 3 [Source:RGD Symbol;Acc:1565834]
Coordinates
chrX:138384912-138388667:-
Coord C1 exon
chrX:138388573-138388667
Coord A exon
chrX:138385836-138388572
Coord C2 exon
chrX:138384912-138385835
Length
2737 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
TGTTTTGTTTTCTATTTCAGTTG
3' ss Score
11.41
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACACCTTCCACCATGTCTGCAGCAACACCACCTGCCGGCAACGTTCCCTACGTTCCAACAACTACAGGCAATCAG
Seq A exon
GTTTGGCCATTTACTTCATCTGTTCAGACCTAGATAACCACAACGTGTTGAAAAGGCACACGATATGCCTTTTCGATTGGTGAGATGTATTGATCCATATGCTTATGTGTTTCTTAACCAGTCGTTAGGTGTGGAATTTTTTAATATATAATTTGGGTACTGTATGTGGTTTTCTACTCATCTCAGAGTTAATTGGTAAACAGATGTTGCTCATGTTATTCTATATCAAATTGTTGCTACCACACCAGTCCTCAAATGTATATGCTGTTCTGTATATGTCTGAAATGCTTTGTCAGTCTGATCAAGAGGAAAACTTATTTTACCACCCCTCCTCTTTTATGATTATTGTGTTTGAACTTTGATTTAATAAGCACATCACCTTTACTTGAAATTCCACTGGAAAAAAAAAGCATGCTATCACATTTCTTTCCAAGGAATACATATCCTGATTTTCACCTAGTGATTACATCAGAAATCCCTCCTCATGTAGACATTAGATGTGCTCATGTTGTTTTTATTTTCATTTGGCTTAGTTTCTTCAGGCAGAGTCATGGGCAGCTGACCAATATTTAGGGACTCTTGACTTTGTGAGGTGATTGGTACAGTAGCTACTGAACACCGTGCTGCAGATTCTGCCTCATCGAAGTTGGGGCTTCCCCCACCCACCCCACCCCCAGTCAGCTGCATATATTTCAAGCATGACCATGGCACACACAGCATTCATTCAATGATTAAACCACACTCCAACCCATGCTCTGCAAAGTTGACACAGTAGAAATAGTAAACTTACTCAAAGTTTCCTGTGAAACTGATCATTGTTATTGATGCACCAAATCCAAACGATGAACAAAATAAATGGAACTTTCCTAAGGCACCATTGTAATGTAAAATCTTTTTTACTACTGTAGATGCCCCAATTATCAGTACATGAACTGAATATGAACATGTTTGTTTCACAATAGAACAGAAAGTTTCTGTAAGTATTAAAAGATGTTATCCGTAGGGTTTATTTTTTATTTACACAGTTGTTATTTGCTAAGTTTGGGTAAACATTTTCCTTTAAAGACCTTGCTTACAACTTGAGTTTGACTGTGCATTCAAAAGTTTCCAAACTGAACTATGAGAGAAATGACATGAAATTTTGGATGTGCAGATAATAGCTGTTGATCTATTTTTATAATGATTTTATATACTCAATAATGGTTTTCTATTTTCAAAAGGGCAAGATTTTTTTAGTCAAAAGTACATATCACATTTGAACTTTAATTTTTTTTATTCCATTTTGTTCTTTTCAAGACAAGATTTCTCTGTGTAGTCCTGTCTGTCCCATAACTGACTGTACATCAGAATGCCCTAAAAACTCAGTGATGTGGCTGCCTCTGCCTTCCAAATACGGAGGCTAAAGGCATGCGCAAAGACACTCAGCTTAATTCTCTAAGCTAAAGCTTTATTTTCTTGTTGTTGTTGAAGCAAAACAACGTCATTTTGTTTGAATTTGGCTGATGAGATTATTTTAAAGGCAGTGAGTGCTGTGTTTCTTCCTGGGTCAGTATACAAAGCAGGGCTCTTTCTGTATGTTGCAAGGTGTTGCCTTCCATAATCATCAAATAGAATTGCTCCAGCTGTTTTGAAGTTTGAATGGCACACAAAGTAACTTAGTGATCTAATAATTATTTTTATTCTTTTCCCAACCTTAACCCCGACCTCTACTTTGCCTAGATCGGGGACACCCGTAAATTCAAGGCCTTAAACGTGTGGGGGCATGTTTGTTGAAGATACATAAGAACCCTAGACACCTGACACATGAAACTATTTGGAAGTGCATTGCCAGTGGAGCAAGCTTAAATGTCTCCCACCCGCAGTCTGGCATTTGGTTCAAGGAGGTAGCTGATATGCTTGCTGCCGCCCTAGTTGTACTTCTCCCAGCAATAGGTCCCTAATACTGTTTCAGACAAAGCCCACAGCTATTGTACACTAGATAAGCAGATTCCCCCAGTCATAAGGAATGTCTTAAAAACAACATGGAAAACCTGAAGGAGCTGGAAGTTCGAATCATTCCGCAGGTGTTACTTGGAATAGTAGCAACTTGGGAAAGTATTACAGTGGAGGTTTATCCAATGCTTGCTAAGTTCTCATAGGCTGCTACACATCAAGGTAAAGAAAATTCAAACGTATTAGTTTACAGAAAATATGTTTGGGAAGAATGATTTTTTTTACTTGATTCCCATGGGAAATGAGGTGTTTGGTAGAGAATAATCATGTTCACGTGTAACAAGCGTGGAGATTATCTTCAAAGATCAAAAGTGTCGCTTTGTATAATAGTACATGACTTACTCAGGATATTTTTGCAAGAGTGTAAGATATTCGGATAAAAATGTAACGCCTTGTTTACTATTGGACATTTTCAAAGGGTTTAGTATTAAGTACATTTTGAGGGTACATGCCTTTTGGATGAGATGAACCAATGTTTAGGCGATAAGCATATATTTCACCGTTATCTAGATAATACCTTAAATATGGCCCACTGTTGGAACCTCCCATAGACTATCCCAGCAATGTGTCTGTTCCATGATTCTTTGCATTAACCCACTGTGTCAGAGGGTCTGAAATTCAGAGTGGGGCATAGCTTGGTTTCTTAGATCATATAAGAAGTGCAATAAGAAGTAGTCTCCTGACACCTTATTCAATAACCCTTCAGTGCTTCTTACTGACTCCCCTGTTTTGTTTTCTATTTCAG
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCATGTGGCCTTTCTACATATGTTCTCGTATGTCCAACACAACAATAAGCATGGTGCAGTCAATATATTAAAGCACAAATACCTGTTGACAAATTCAAGTTTTAAAAATCTGTGGAGATGTTGAAGCAAATAGAAAATTAACCACTATGTGTTACCTTATTGGATTAATCGTAAATGAATTATCATATAGAATACAACCACACATCTTTGTCATGTATATGAATTATCAGATCCATGTTACATTAATTTTCCCTCTGATAGAAATTGCCACATTGAATATAACCATAAAATATTGTGACTTTTTTCATTAATGATTTATGCTAACTGAACATCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTTGAAGTGTTACCTTACTATTTTGTTTACAAGATAGTCTATTGGATTGATGTAGAATGTAACTGATATTTCCTATCCATTTTCCTCCATTGGTATATTGTATTAAATTGGGTTCTGTTTAGCTTTTCCAAGCTATAGTGTTTTCTTATTGTATGTGGTGTTTGGTTTCAATTAGAATGACATAAGTGGGAACAGAACTATATGTGACTGAAAAGTATAACAGGTTCGTGGTAATATGCCCTCTTTAAAACATTTCCTTGAGCTATACATTTTGAAGCCCTCACTTCTGAGTGGACACAAAATCTGTTCGTGTGTAGGATTTCACCTGTAGATCTGACCTTGCATAGTCAATAATATACTAAATTTTTAAAGGAGAAAAATACTTACCTACTTATGATGGGAAAGTTCAAATGTCAACCTCAAATCATTCCTCTTAAGTAATTTGAGAATCAAGTGTTCACACTCCAATAAATTTCGTAGCATGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002487:ENSRNOT00000043258:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]