HsaINT1022627 @ hg38
Intron Retention
Gene
ENSG00000076770 | MBNL3
Description
muscleblind like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:132379204-132381432:-
Coord C1 exon
chrX:132381359-132381432
Coord A exon
chrX:132379678-132381358
Coord C2 exon
chrX:132379204-132379677
Length
1681 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCTTTTTTTTTCCATTTCAGCTG
3' ss Score
11.88
Exon sequences
Seq C1 exon
ATACCCCAATTATCAATAGATGAACTGAATAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCTCAGTAGAACA
Seq A exon
GTAAGTTTCTTTCAGTATTAATATAAATAATATTTATAGGCTACATATTTTATTTACACAATTGCACTTCTAAAAGGCTTTCGTAAATATTTTCATTCATAGACATTGCTTGTGATGTAGAGCTTGATTTACACATTATAAATTTTCCAAATTGAAATGTGAGTGCAAATATGCAATATTTTTTATATGGCAATGACAGCTGGTACTGTATTTTCTCAATGAGCTAACACATTCTTAAATGTTTTCCTATTATTAAAGGAATATATAATTTGTTAGCCAGAGGCACAGATTACTTTTGAGTTGTAATTCTTTAACCATTTTATAGCTTCATTTTTTTTTTGAAGATCAAACAAGAATTTTCAGGATTTGACTGATATGATTATGTTAAACACAGTAAGCACTATGCCTGTCATGTGACATTGTATTGAATTTTGAGTGACATAATTTAGTAACTGAGTCATTATTTTCATTCCAATCATGTCTCTTTTTTAAAATTTTTGTTGTTGTGGGATTTTTTTTTTCTCCTTCACCCTCAATCTCCTCTTTGCCTGGTGCCCATCATGGCACACACTTTTTTAAGCAATCATTCACTTAAGAACATGTGATTTCTGAAGCCACTTAAGACTCCTAGGTATTTTAATTAATTCTAGGGACTTACTAAAATAGTGTACCAACTCTGAATTGCATACCTTCATCATCGAAAGTTTGAAGTTCTCACACCTGGAGTGTGTCATTTGGTTGAAGGAGGCAGCAGTTCTGTTCCCTCGTGAACTAGTTCCCCAGACCCCAGCTAGCCCTTCTTTCCTGCTGAGGACACACGGGCTTAGAACACTAAGTGTTCTGGACAGAGCAGATAGCCGACTGGACATTAAATAAATAGGTCTCCTCAATCATAAGGAAGGATTTTAAAAGGCACCTTTGAGCACATGGGATAACTGAAGGAGCTATAAATTGTCATTGTTTCCAGAGGTGTCATTTGGGATAGTGGCAACTTGGAAATAGCACTAAACATGATAATGTAGGTTTTGCCAACACTTGCCCAACTTTCATGGGCTGCTTTACGTCAAGGTAACCACAAGTTGTCAAATTAACTTTCCAACAGAGCATGTTAGGGAAGAGTGATTCCTTCTTGCTTGATTTTGTTAGAAATGTAGAGATATTTGGCAGAACATAATCACTTCAATATGTAATAGGTGCTAAAAATTCCTCTAAAGTTCAAAAATGTAATTTTGTACAATACAATACCCAGATTTCACAGGTAGGCTACTTCTGCATGGCTCTAAAACATTCAGAGAAAAAGTTGAAAGTGTATTTAATATTTGCATATTTCAAAATGTTCGGTATCAAACATGTTTTCTCAGTACATGCCTGTTGAAAGGTGGACACATGGGTGTATGTTCAACAAAAAGTAGATAGATAATGCCTTAAACATTGGATTGCATCTCTGTTAGGACAGTTCTCCACATTAGCACTCAAAGGGTATCATAGACTATCATAGATATATGGTTCTTTCATGATCATTCTCAAAAGCCCCATTTCAATCTGAAATTCAGATTGGGGATATTTTGGCACTGTTAACAGACAGAACTGGAACAAGACCCACCACACTCTCCTGACTCTTCCTTCAATAACCTTTCAATATTTCTCACTCTTTCTTTCTTTCTTTTTTTTTCCATTTCAG
Seq C2 exon
CTGAAATTCTGAACAGCAGAGTTATGGAGTATCAGAATCTTTCCATGGAAACCTCCATATGGCCTTTCTATATATATTCTCGTATGTCTTATTCTACCAACACAACAATAAGCGTGTTGCAGTCAATGTATTAAGCAAAGCAAACCTGCCAGCCAGCAAATTCAAATAAAAAATAAAGCATTAAAAATCAATGGAGATGTTAAAACAACACAAATAGAAAACTAGTAACTACCATCCATCCTATTTGAATTATCAAGCAGAACATGACCATAAAATTTGGTAACTTGTTACATTACTCTTTGTGATTTTCTAATAACCATGCTAAGTGTATTTCCACAGTGAGCTTTTGGCTTACTATATACATTCTTGGTGGATAAATTGTTCATCTGTTTTTGAAGTGTTACCTTACTATTTTGTTTACAAGATAGTCTATTGGGTTGATTCAGGATGTAACAAATATATTCAGTACCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076770:ENST00000370839:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=0.722 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCATGTTTGTTTCACAGA
R:
ACAAAGAGTAATGTAACAAGTTACCA
Band lengths:
347-2028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains