Special

GgaINT0072176 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr4:3493228-3495922:-
Coord C1 exon
chr4:3495849-3495922
Coord A exon
chr4:3493418-3495848
Coord C2 exon
chr4:3493228-3493417
Length
2431 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTTTTCTCTTTCCCTTGCAGCAG
3' ss Score
12.33
Exon sequences
Seq C1 exon
ATATCCCAGTTATCAGTAGATGAACTGAGTAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCCCGATAGAACA
Seq A exon
GTAAGTTGCTTTTCAGTATTTCTCTTTACAGTGGATTGCTTTGTTCAAGGGCACTGCATCCCCCAAAAGGGGCTGCTTTGGGCAGGGGGTCTGAGCCTGCAGGACCCCGGCGGCTTTGCTCTCTACCAAGTCAACAGCAGTTCAGCAGCTGCAGCACAGATACAGACCAGCCCTGTGGCTTACAACAAGCAGCGTTTCATTGTGTCTAAAATAGCTGTTTTGGGGTGTTTGTAGCCTCCCTTCCTTGCATCCCCCTGAGTCTGACGGTTATGTTTGCAAGTTACTCTTGCTCTGCACAGCTCCCAGCAGCCTGCAGGTGCCTCAGGGGTTCGTGCTATTGCTGGCAAAGTCTGCTCTGGTAATGAGTCAGCTGAAAAGGTGAAACTCATGTTTTGCTGTTAGTGGCGTATTACTTTTCCTGGGGTAAGCAGGACTGGGTCATCCTCAGCTGCTGTGCACCAGCAGGATGGGCTGGGTTTGGGCAGAGATCTGTTAACCACAGTGGGGCATGGCCCATGGCAGTTTCCTTCACGGGTCCACAAGCAGCGTAGCCTTCATGCCACATGCAGATCCTGGGCCGCTGGGCTTCTCTGTCTGAGAATAATGAAGTTTATCCTTTCCTTTGACTTACAGAGCATCTTGCAGCCTTAGCAGCAGAGTTATTTTTCCATTTCTTTTATTTGTAAGTGTTAGCTAATATTCACGAGAGAGAATCCCTTGAGGGTTTTAGTTCATCACTTCATTTTTCACCCCAAGAGGTGAACGAGCAGTTCAGCCCCTTCAACAAGAAATCACCAGATTTTCCCAACGCAGGCCACAGATATGCAACCCATTTCTTCTTTAGGTCATGTATTACAAGCAAGTACTTAAATGCTGGAAATTAATTTGGCAAGCAATTCTCTAATTATATCTTCAGCAGCTGACAGAAGTCACTCGTGTCGGTGGTGTCCCTTATCTCTGGTGACCCAAATAAGCTGTCGTACGTATAAATTGCCTGCTAACTGGGGCCGTGGACCCCAGTTAGTTTAGGTGAACAATGAGGTATCTCTGTCAGTGAAAACATTCTGTGCTGTGCAGTGTATTGCTCTCCTAAACAACAGACAGACGTGACACCTAACATGTTCCACAATTTCCATAACACGTGCAAAACAGTCTGTTCCACCCGATAAGGAGATCATTTGCATTGGAAGAACCTCGTTATCGAACTCTTAGAGATTGATTTCTCTATTTATTTCAGGAAATTTCTTTTTTTTTTTTTTTTTTCTGGATTCTTTTTGCTTCTGTGTGTGTGCTTAAACACACACTGACAATTAGTAATAATTTCAGAGTAGGAAAGGAAATTCCATGAAATAGCTTTATTTAGCAAACAGTGAGGATGATACAGTCTGTCTGAGTCAGCCAGGCTTTTAAGAGCAGTGAAAACCCTTGCCTGAAAGAAGTAGGGTCAAACACTTTATATTTGGTTGGATCTCTTGGGGACCAGCCTGCTGGGCATGGAGAGTGTCTGCATCAGACAAGCAGCCTGTTCTTCACCAGGGAGCTGTGACCACATGCCTGACCAGGTGCACTCTGCCAGATGTGCTTGTCCTCTCACCACCTTGCAGCTATGGGACATAGCTCTTTTCTACCAGTCTGTAATGTGATTTATTTCCTCCAGTGTCCCCAGTGCTCCCAGACCCACTAGTGACCATTGCTACACAGGAGCCTTTGTGTTTTGATCCCGTTTCATGCAGACACCCAAGCACGTGAAGTTGTGCGTGTGCTCCTGTTTTTTGCCAGATAAAGATCTTAGCTGGTGTTCTGCTGCGCCACAGGGTGAATTCCCAAAGCTGCTGTGAGTGGGAGTTTGGTAATAGAATCTGCTGTGGCAGATGTTTTTCTCCATGGTTGACCAGGTCCTGGTAGCAAGGCTGGCTAGCCTAGCTCTTTGCAGGGAGGATTTTCACAAGTACATCCCAGGAGAGGAGATTTGCTCCCAGAAGAGGGCCACCTGAGCACGGGGTTTTTGCGTCTGATTCACCTCTGGCTCTCTGGGATTAGATTTTAATGTGAGTACCTTCAGAGCAAACAGGAGGCAGCAGCAGTCAGGGATTCCTCTGGCCCTCTCATCAGTCGCTCTCTACCTGCCATCTTGTCTCACAAATGAGGTCGTTATTCTCCCACCTCCCCATTTCACAAATTGTTTTGTCAGCATGTGCGAAGCAGGCTGGAAATGGAAAGCCCCAAGTGCTGATTAAAGAGGATGCCAAGTGTGTTATTAGCAATTTCACCCTACGTCAGAAAATTAAGGGAATAAAACATTTTCTCTCCACGACATACTAATAGCAACCTCAAAGGCAGTGCAGGGAGGATGTAGATGCATCTCAGTAGAAAGACTACTATGGCAAAATGTACCTGACGTCTCACTCTTTGTTTTCTCTTTCCCTTGCAG
Seq C2 exon
CAGACCATGTTGAAATTCTGAACCGTAAAATTACGGAGCACCAGGACTTCTTGGTGGGAAGCTGCGCATGGCCTTTCTGTATATATCCCCTCTTCCCTTCTCTCGTTCTTTACCACCTCTACAGTAAGCCTGTTGCAGCCTACATGTTAACCAAAAACTGATCAATGGGAATGTCAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066:ENSGALT00000009784:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact

3' UTR

No structure available
Features
Disorder rate (disopred):
  C1=0.600 A=NA C2=NA
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]