MmuINT0096317 @ mm10
Intron Retention
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51120080-51123911:-
Coord C1 exon
chrX:51123817-51123911
Coord A exon
chrX:51121019-51123816
Coord C2 exon
chrX:51120080-51121018
Length
2798 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
TGTTTTGTTTTCTATTTCAGTTG
3' ss Score
11.41
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG
Seq A exon
GTTTGGCCATTTCTTTCAACTGTTCAGACCTAGATAGCCACAAGGTGTTGAGAAGGCACAGTATATGCCTTTTGGAGTGGTGAGATATATTGGTCCATATGCTTATGTATTTCTTAACCAGTTGTTAGGTGTGGAATTTTTAATTTTTTATATATAATTTGGGTACTGTATGTGGTTTCCTATTCATCTCAGAGTTAATTGGCAGCATGTTTACTCATTGTTAATTGGTAAGCAGATGTTACTCGTGTTATTCCATATCAAATTGTTGCTCCCACACCAGTCCTCAAATGTATATGCTGTACTGGATATGTCAGAAATGCTTTCTCATCCTGATCAAGAGGGAAACATATTTTACTACCCCCTCCTCATTTTGGGTTATTGTGTTTGAACTTTGATTTAGTAAACATATCGCCTTTACTTGTAGTTCCACTGTGGGGGGAAAAAAGCATGCTATCACATTTCTTTCAAAGGAATGCACATCCTTATTTTCTCCCAGTGATTACATCAGAAATCCCTTCTCATGGAGACATTGGATGTGCTTGTGTTGGTTTGAGTTTCATTTGGCGTAGTATTTTTCAGCAGAGTCACAGGCAGATGCCCCATATTTAGAGAAACTGGCTGTTGTGAGGTAATTAGTAGCTACTGGTACCGAGCTGTGCTGCTGCTGGTTCTGCCTCATTAAAGTCATGGCTTGCCCCTGGTCAGTTGCTTAACTTTCAAGCATGATAACCACGGCGCACACAGCAGTCGTTCCGTGACTAAAGCACACTACAACCTGTGCTCTGCACAGTGGACACAGTGGAAAAAGTAAACTTCAAGTGCTCCATGAGGCTGATCAGTGTTACTGATGCACGAAGCTCAAGCAATGAGCAAAATAAACAGGATTCTCCTGAGACACCACTGTAATCTATGATCCTTTTCACGACTGTAGATACTCCAATTGTCAGTAGATGAGCTGAGTAAGAGCATGGGGTTTTCATAGATGTAGAAGTTACCAATAGAACAGAAAGTTTTTTAAGTATTAGTGGATGTTATTCGTAGGTGATATCTTTTATTTTACACAGTTGTATTTGCTAAGGTTTGGGTAAACATTTTCACTTAAAGACATGGCTTATAATTTCAGTTTGTGCATTCAAAAGTTTCCAAATTGAATTATGAGGCAGAAGAGATGAATTTTTGATGTGGAGATAACAGCTGTTGCTGTATTTTTCTAATGACTTTATATACTCAATAATTTTTTTTTTATTTTCAAAGGGGCAAGCTTTTTTGTTTTGTTTTGTTTTGTTGCCAAAAATACAAATCACATTTGAATTTTAATTCTTTTAGATTCCATTTTGTTCTTTTCAAGACAGGGTTTCTCTGTGTAGCACTGGCTGTCCTAGAACTCACTCTGTAGACTGGGATGCCATAAAACCTCAGAGATGTGGCTGCCTCTGCCTTCTAAACACTGGGGTCAAAGGCATGCTCAAGGACACCCAGCTCAATTCTTTAAGCTTAAGCTTTATTTTTTGTTGAAGCAAAACAATATAATTTTGTTAGAATTTGGTTGATGAGATTATTTTAAAGACAGTGAGTACTATGTTTCTCCCTGAGTCAGCGTGCAAAGGTGGGCTCTTTCTGTATGTTGCACGGCACTGCATTGCATGTACAGCAAGTAGAATTGCTCCAGCTGGTTTGAAGTTTGAATGAAATACAAAATAATTTAATGATCTAATAATTATTTTACTTCTTTTCCCACTCTTAATTCCTGACCTCTACTTTGCCTAGATCAGGGACCATTAGTAGCACACACGTAAATCCAAGGGGTTACTCACGGGGAACACTGTTGAATATACCTAAGAACCCTAGACAGCTAACAAACACGTGAACCGTTTGGAACTGTGTTCTCAATGAAGTAAGCTTGAATGGCTCCCACCTGCAGTCTAGCATTTGGTTGGAGGAGGCAGCTGATCGGCTTGCTTGTGCCCTAGTTACCCATCTCCCATCAAGAGGTCCCTGATACTGTTTCAGACAAAGCCCACAGCTATTGCACCCTATATAAGCAGATTCCCCCAATCATAAGGAATGTTTTCCAACAAGGTGGAAAAACTGAAGGAGCTAGAAGTTAGAATCATTTTGCAGGTGTTATTTGGAATAGCAGCAACTTGGGAAAGCATGACAATGGAGGTTTGTCCAGTGCTTGCTAAGTTCTCAAAGGGAGCTATACATCAAGGCAAAGAAAATTGAACGTAATTGCTTTACGTAAAATAGGTTTGGGAAGAATGATTTGTTTTTCCACTTGATTCCTTTGGTAAATGAGGTGTTTGGCAGAGAATAATCATATTCACATGTGACAGTTGTGGAGATTTTCTTCGAAGATCAAACCTGTCACTTTGTATAATAGTGTATGACTTACTCAGGATATTTCTACAAAGGTGTAGGATCGTTTGATAAAAGTGTAACACTGCTTACTATTGGAACTTTTCAAACTGTTTGGTATTAAGTACATTTTGAAGGCACGTTTCTTTTGAATGAGATGAACCAATATTTAGGTGATGAGCAAAAATTTTGGCATTATATAGATAATACCTTAAAAATGGCCCACCATTGGAACCTCCCATAGACTATCCCAGCAGTGTGTCTGTTTAATGATTTAATTAGCCCACTGTCACAGAGGGTCTGAAATTCAGAGTGAAGAATATCTTGGATTATTAGTCCATATATAGAAGTGGAATAAAAACTTGTGTCAGGTCTCCTGACACGTTGTTCAATAGCCCTTCAGTATTTCTTACTGACTCTTGTTTTGTTTTCTATTTCAG
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCGTGTGGCCTTTCTATATGTATTCTCGTATGTCTTCTTGTACCAACACGACAATAAGCATGGTGCAGTCAATATACTAAAGCGCATATACCTGTTGACAAATTCAAATTTTAAAAATCTGTGGAGATGTTAAAGCAAATAGAAAATTAACCAGTATGTGTTACCTTATACGGATTCATTGTATATGAATTAGCATACAATATACAACCATACAGGTTTGTCATGTATATGAATTATCAGATCCATATTACATGAATTTTCCATATGATATGAATTACCATATTGAATATAACTGTAAAATGTTGTGACTGCTTTCCAGTAATGGTTTATAATAAATGAACTTCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTGGAAGTGTTACCTTACTGTTTTGTTTACAAGATAGTCTATAGGATTGATGTAGAATGTAACTGATATTTCCCACACCATTTTCCTCCATTGGTATATTGTATTAAATTGGGTTCTGCTTAGCTCTTTCATGCTATAGTGTTTTCTTGTTTATACGTGATATTTGATTTCAATTAAAGCATCATAAGTGGTGAACAGAACTATATGTGACTGAAAAATGTGACAGGTTCATGGTAATATGCCCTCTTTAAAACATTTCTGCAAGTTTCCGGAGGCCTCACTTCTGAGTGTGCACAAAATCTCTTCATATATAGAATTTTACCTGTAGATCTGACCTTGCATAGTCAATAATATACTAAATTTTTAAAAGAGAAAAAAACTTCCCTACATGTGATAGGAAAGTTCAAATGTTAACCTCAAACCATTCCTCTTAAATAATTTGAGAATCAAGTGTTCACATTCCAATAAATTTCTTAGCATGTATAAAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109:ENSMUST00000114876:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=0.953 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types