GgaINT0074954 @ galGal3
Intron Retention
Gene
ENSGALG00000016094 | SFXN5
Description
NA
Coordinates
chr4:93360341-93360863:+
Coord C1 exon
chr4:93360341-93360394
Coord A exon
chr4:93360395-93360806
Coord C2 exon
chr4:93360807-93360863
Length
412 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTTTTTATTTCCTCTGTAGTGG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTTGTTGGTCTTCTTCTGCCCAACCAGACGATAGCATCCACTGTGTTTTGGCAG
Seq A exon
GTAAGGCTCATCTGCCTCCATGTACTGAATGGGTGGGGGATGTCATGCAAAGGAAAGCAGCCTTGACTTGTGTCTTCAGGACAAGCTGGTGCATGTAGCTTTGTGGCACGTTAGGGGGAGATTATGGCTTTTAGCTTTAAAATTACTTTGTACCGTGGCCTTAAAGTCTGTTTTTAGATCTAGTTGCCTATTTTCATGAAGCAGTTCTTGTGCACATGCTTATGTGTGGATGGAGTGCTGGTGAAAGCTGCATGCATTTCTTTCTCAGCCCAGAGGGTCAGTGCATGCACAAGCTTGTAAAAAGATGTGGCAAATCACAGACAGGTCCAAATGGAGGTGGCAGTCCTGTGTTCGTAGACCTTATTTTCTGCAAGGTTACATTTACGTCTCTCTCTTTTTATTTCCTCTGTAG
Seq C2 exon
TGGTTGAATCAGAGCCACAATGCGTGCGTCAACTATGCAAACCGCAACGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094:ENSGALT00000025934:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.0=100)
A:
NA
C2:
PF0382012=Mtc=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]