MmuINT0142663 @ mm10
Intron Retention
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85269098-85269963:-
Coord C1 exon
chr6:85269910-85269963
Coord A exon
chr6:85269155-85269909
Coord C2 exon
chr6:85269098-85269154
Length
755 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTCTCCTTGTTGCCCTCAGTGG
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGTGGGACTTCTCTTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGGCAG
Seq A exon
GTAAGAGTCTGTGCAGAGGGCTCCTGAAAGAATGGATGTGTGTGTGTGTATGTGTGTGTGTGTGCACATGTGCATGCGTTCATGCACACCACACACACACACACACACACACACACACAGGCATGAAACTCCCCCCCCCCGCCCCCCATTGCTTCCTGCTTCATCCAGGCCCCTGGGTCAAGTGCTCCTATCTCCTAGCACTTACCCATAAACTACCAAAACCTTGATTCTGCCGAAAGGCCTCAAACACCTCAGTGTGATGCCAGCCATTCCATGTCCCTTTAACCTTCAGATGGAGGTGAGGAGGGAGCCAGATCTGGAACATGATGGCTGTGAGTGGCAATTCATTCTGTTCGTTGGTTGCTTGACCCATGGTCAGTGACTAGAGGCCTATAGCCTCTTTCTGATACCAGCTTACCCCAAATCTGGTCTTGCTAACCCAAAAGAAACACCTGATGGTTCTGACAGAGCTTCTGTCAGGTAAAGAGGGGTCAAATTGAGGAGGCTGTGTAGGAGATGAACTCTTCTACCTTCTGGATTCCTCTGGGACAGTTCTCATATTCAGACCTTGCAGCCAAGTGGTATCAGCATCTTGGATACTGTATCCCCCACCCCCAGCTCACCCAGAAGTCACCTCAGGGTCCCCATCTCTGTATACATATAGAGCAGTTTCCCATGACTTTGGGCAGGAGTGGAGATGGGGTCTTCCATGGAGGTGACCCGGCTTACCTCACTTCTCTCCTTGTTGCCCTCAG
Seq C2 exon
TGGCTGAACCAGAGCCATAATGCCTGTGTCAACTATGCAAACCGCAATGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720:ENSMUST00000045846:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.5=100)
A:
NA
C2:
PF0382012=Mtc=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types