GgaINT0074954 @ galGal4
Intron Retention
Gene
ENSGALG00000016094 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr4:89325203-89325725:+
Coord C1 exon
chr4:89325203-89325256
Coord A exon
chr4:89325257-89325668
Coord C2 exon
chr4:89325669-89325725
Length
412 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTTTTTATTTCCTCTGTAGTGG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTTGTTGGTCTTCTTCTGCCCAACCAGACGATAGCATCCACTGTGTTTTGGCAG
Seq A exon
GTAAGGCTCATCTGCCTCCATGTACTGAATGGGTGGGGGATGTCATGCAAAGGAAAGCAGCCTTGACTTGTGTCTTCAGGACAAGCTGGTGCATGTAGCTTTGTGGCACGTTAGGGGGAGATTATGGCTTTTAGCTTTAAAATTACTTTGTACCGTGGCCTTAAAGTCTGTTTTTAGATCTAGTTGCCTATTTTCATGAAGCAGTTCTTGTGCACATGCTTATGTGTGGATGGAGTGCTGGTGAAAGCTGCATGCATTTCTTTCTCAGCCCAGAGGGTCAGTGCATGCACAAGCTTGTAAAAAGATGTGGCAAATCACAGACAGGTCCAAATGGAGGTGGCAGTCCTGTGTTCGTAGACCTTATTTTCTGCAAGGTTACATTTACGTCTCTCTCTTTTTATTTCCTCTGTAG
Seq C2 exon
TGGTTGAATCAGAGCCACAATGCGTGCGTCAACTATGCAAACCGCAACGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094:ENSGALT00000025934:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.5=100)
A:
NA
C2:
PF0382012=Mtc=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]