HsaINT0148856 @ hg19
Intron Retention
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73227560-73228707:-
Coord C1 exon
chr2:73228654-73228707
Coord A exon
chr2:73227617-73228653
Coord C2 exon
chr2:73227560-73227616
Length
1037 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTCTCATCATTGCCTTTCAGTGG
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTAGTCGGTCTTCTCTTGCCCAACCAGACACTGGCATCCACTGTCTTCTGGCAG
Seq A exon
GTAACAGTCTCGCAGCAAACAGGGCTCCTGAAGGAAGGGCCCACACAGGTGCTGGTTAAGAACTCCCTGCTGTGGTGTCTCCTGCCCCGTCCAGACCCCGTGTAGGGTCAGTCCACCCCAACACCACCCCTAGCCCAGAAGCCACTGAAGGAAAACCAGGACTTTGGCCCTGCTGAGCAGGTCTCCAGCAGCCCAGCATGTCTCAATCCACCATGTGTCACTCTAACCTTTGGACAGAGGTCATGAGGGCTGCGTGCCCCTGCCTGGAACATGCTGGCTTGTCAGTGGGGTGGCCCCCACTCTGCCCCTTGGCTGCTCATCCCAAGGCCAGTGACCCTGAGGCCCATAGCCTCATTTTGACATCAGCCTCCCCCACATCTGCTGAGGAAGCTAAATCCACCCCTAACCTGAGGTTGTGAAGTGCATCACAGACCCTGGTCCCTGCTCTTGGAGACAGTCTGGGTTGTGATGCCATGAAAACTGAGGATATCTCTGTGTTTGTGTGTGCAGAGAAAGACGGGCAGGAAGGAAAACCTGTCTGTCTTCTAGGAGAAAATGTCAGTCTTCCCTGAACTAAACTCCTGCCGGCCTCTGTGTCTGGGAACTGGAGGTGCAGGATACTGGACTGGGAGATTTTTGAAAGAATTGTAGGGCTGTCAGTCATTCTAGGCCAACTTTTGTCCAGCAGGTAATATAATAAAGATGGTGTGACAAAGGCAGTGGGGTCTGCAGGGGCAGTGAATGCCATCATTCCAAGAGAGGTGACTGTCTCAGGATCAGGTGGACTACTGGGGTGCGCAGGACCCCATTCAGGAACCGAGAGACTTCCCGAGAGGCAGGGCTTCCAGTGCTAACACCAGCACAGCCCTGGGCAAACCAGGACGGTCAGTCATGCTGACCGGCAGCATGGGCGGCACCATGTGAGCTGGAGACCGCATGCTGTGCCTTTCTGGGGATGTGTGGCCTCCTGGGGTCCAGGCCTGGCTTCCAGGGAGGTGACCACTCCTTCCCTGACTTCTCTCATCATTGCCTTTCAG
Seq C2 exon
TGGCTGAACCAGAGCCACAATGCCTGTGTCAACTATGCAAACCGCAATGCGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040-SFXN5:NM_144579:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.5=100)
A:
NA
C2:
PF0382012=Mtc=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)